Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2272 ATGTTTGACACTGGTTACAAGTCACAGTATATTGGAGGCCAGAGGGAGAAGTTTGTAAGGTTGGATGATCTTGATTCTAACATGTCATTCTCAGGCAGACCAAGTTTGATGGATAGGCTAAGATCGATCTTCCATGTTGGCGGCCGCGCAAGGAAGAATCCGTCACAATCCTTTAGGCTAGGAGTGAAGAAAGGATCAGCAGGACTCAGAACATTTGGAAGGTCACTGAAAACTGGTGTAACTACTTGGGCAGTGTTCCCTGAAGATCTCAAAGTTTCAGAGAAGAAAGTGTTTGATCCTCAAGACAAGCACCTTCTCCATTGGAACAAGTTCTTTGAGATCCTCTGCATTTTTTCATTAGGAGTGAAGAAAGGATCAGCAGGACTCAGAACATTTGGAAGGTCACTGAAAACTGGTGTAACTACTTGGGCAGTGTTCCCTGAAGATCTCAAAGTTTCAGAGAAGAAAGTGTTTGATCCTCAAGACAAGCACCTTCTCCATTGGAACAAGTTCTTTGAGATCCTCTGCATTTTTTCAGTAGCTGTTGACCCTTTCTTCTTCTATCTCCCTTACTTCAACGTCAAGTCATTCTGCCTYGCCATAGATAGCACRCTGGCGAATTTTACAGCAGCACTGAGGACTGTATTGGATTTTATCTATCTCCTGCGCATAAGCTTTCAGTTCCGAACTGCTTATATCGCGCCTTCATCTCGTGTGTTTGGAAGAGGTGAACTTGTCATAGATCCTGCAAARATTGCCAGTAGATATTTACAGCGATATTTCATTATCGACTTCATGTCTGTGTTTCCTATGCCACAGATTATAGTGTGGAAATATCTATACAAAACAAGACATTCAGAGGTATTGAGTACAAAAACGGCACTGTTGAGAACTGTGATCCTGCAATATTTTCCAAGATTTCTAAGGTTTCTTCCATTAGCATCGGAAGTTAAAAAGACAGCTGGTGTTTTTGCAGAAAATGCACTGCTTGGAGCCATTTACTATTTGATTTGGTTTATGCTAGCTAGTCATATAACTGGCTCCGTTTGGTACTTACTTGCCATAGAACGCAATGACACATGTTGGAACAATGTTTGTCTTGAAGATAATAGATGTAACAGTCATTTCTTGTACTGTGGAAGTACCAATAAGCACATCCCAGGGTTTGATGCTTGGAAAAATGTCAGTGAGGATGTTCTTGTAAAGAAGTGCTTTGTTGATGGTGAGTTCAATTATGGAATCTTTGCTCAAGCAATCAAGAGTGGTATTGTTGCTTCTGTTGAAGTCTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGCCTTCAAAATCTGAGTACAATTGGCCAAGGGCTTTCAACCAGCACCTACAGTAAAGAGGTGTGGTTTTCCATAGCAATAGCTGTTATGGGGCTCATCCTTTTCGCACTTCTGATTGGAAACATGCAGACATACCTTGACTCAATGTCGGTTCATCTTGACGAAATGAGGATCCAAAGACGTGATTCTGAGCTATGGATGCATCATCGCTCGCTTCCTCCAGAACTAAGGGAAAGAGTCAGACGCTATGATCAATACAAGTGGCTGAATACCCGAGGCGTGGATGAAGARAGCTTGATGAAGAGCCTTCCAAAAGATTTAAGGAGAGATATCAAACGGCATCTTTGTTTGAATCTGGTTAAAAGGGTTCCTCTCTTTGCTAACATGGAGGAACGCCTGCTCGATGCTATATGCGAGCGACTGAAACCTACTCTGTACACAGAGGGCACTGACATAGTTAGGGAAGGAGACCCTGTCAACGAGATGCTCTTCATCATCCGTGGACGCCTAGAGAGTGTCACCACAGATGGTGGAAGGAGTGGATTCTTTAACAGAGGGCTTCTCAAAGAAGGAGACTTCTGTGGTGAGGAGCTACTAACATGGGCACTAGATCCAAAAGCTGCAGCAAACTTGCCATCATCTACTAGGACAGTGAAGGCCATAAATGAGGTCGAGGCATTCGCATTGGAAGCTGAGGAGCTTAAGTTTGTCGCTTCGCAGTTTAGATACATTCATAGTAGGCAGGTTCAGCATACCTTCAGGTTCTACTCACAGCAATGGAGGACATGGGCCGCTATCTACATTCAAGCCGCGTGGAGGAGGTATATGAGGAGGAAACACACCATGCAAAGAAAGGCAGGAGGAAGTAATTATTATGATTTGATGCAGTGGGTGGTGATTCGCCAAAGGCCTTGGGTTACGTTCATAAGTTTCATTAAGCTTTGCCAACCATGGTATGCTTCACGCTTTGCCGCGAATGTACTTCACGGTCATAGGCTTCGTGAAGCAGGTAGTTCCACTAGTCTAGGAAGAATTCAAAAACTCTGA 2364 0.4327 MFDTGYKSQYIGGQREKFVRLDDLDSNMSFSGRPSLMDRLRSIFHVGGRARKNPSQSFRLGVKKGSAGLRTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKHLLHWNKFFEILCIFSLGVKKGSAGLRTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKHLLHWNKFFEILCIFSVAVDPFFFYLPYFNVKSFCLAIDSTLANFTAALRTVLDFIYLLRISFQFRTAYIAPSSRVFGRGELVIDPAKIASRYLQRYFIIDFMSVFPMPQIIVWKYLYKTRHSEVLSTKTALLRTVILQYFPRFLRFLPLASEVKKTAGVFAENALLGAIYYLIWFMLASHITGSVWYLLAIERNDTCWNNVCLEDNRCNSHFLYCGSTNKHIPGFDAWKNVSEDVLVKKCFVDGEFNYGIFAQAIKSGIVASVEVFPKFCYCLWWGLQNLSTIGQGLSTSTYSKEVWFSIAIAVMGLILFALLIGNMQTYLDSMSVHLDEMRIQRRDSELWMHHRSLPPELRERVRRYDQYKWLNTRGVDEESLMKSLPKDLRRDIKRHLCLNLVKRVPLFANMEERLLDAICERLKPTLYTEGTDIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRYIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRYMRRKHTMQRKAGGSNYYDLMQWVVIRQRPWVTFISFIKLCQPWYASRFAANVLHGHRLREAGSSTSLGRIQKL* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2272 787 CDD CAP_ED 564 695 IPR000595 -
Amo05g2272 787 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 122 - -
Amo05g2272 787 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 117 786 - -
Amo05g2272 787 SUPERFAMILY cAMP-binding domain-like 495 683 IPR018490 -
Amo05g2272 787 Pfam Cyclic nucleotide-binding domain 585 674 IPR000595 -
Amo05g2272 787 Gene3D Helix hairpin bin 492 555 - -
Amo05g2272 787 SMART cnmp_10 564 695 IPR000595 -
Amo05g2272 787 ProSiteProfiles IQ motif profile. 700 729 IPR000048 GO:0005515
Amo05g2272 787 SUPERFAMILY Voltage-gated potassium channels 160 485 - -
Amo05g2272 787 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 122 - -
Amo05g2272 787 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 117 786 - -
Amo05g2272 787 ProSiteProfiles cAMP/cGMP binding motif profile. 564 647 IPR000595 -
Amo05g2272 787 Gene3D Jelly Rolls 562 682 IPR014710 -
Amo05g2272 787 Gene3D - 169 488 - -
Amo05g2272 787 Pfam Ion transport protein 168 490 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2272 Amo-Chr5 48525036 48531125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2272 6 786 Ion Channels AT1G15990 61.181 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2272 K05391 - gmx:100810453 1063.52