Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2250 CCAACCATTACAATTTACAACTTTCTATCTTCCACCACCACTTCACTTACATTGATCAAAGTGATGATGGGAAGAACAGGAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACACCAGAAGAGGACAAGATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGATGCGGCAAGAGTTGCAGATTAAGGTGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAGTTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCAGTTCTTGGCAACAAGTGGGCAGCAATAGCAAGTCATTTGCCAGGGAGAACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATGACACACCGTCCAAGAACAGATCACCTTAATCTCCTTACCAATCTGCAACACATTCTTGCTGCTGCTAACATTGTCACCACTTTCACAAACCCTAATCATCAAATCAACACTGCTCTAAGCCTTCAAAACATGCTTCAACCCATGCCTCCTGCACCCTCAAATTTACTCAATAATCTTGGATCATCTTTCTCATCATTATCACTGCCAGATACTCTTCTTTATGAAGGTTTAGGGTTGAATGTAAATGACCATTCTACCCTTCATAACATTATTTATAATGCTTCAAATTCAGCTGCTTCTTCCTCTCAGAATCAGTTCCAAAACTTTGATCAACAACAGATGATGATGACGATGATGAATGGTAGCAGAAACAATAATAATAGCAGTAATTGCAGTGAGTCTCAGAATTTTGACGAACAATTTGGTTCAACAAATGCTACTACTACAGTCACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGTTCTTCTTCTTCTCCAACCAAGAATAATAATAATAATATTATTAACAGTAATTCCACCTTTGAAATTTGGGGAGATTTCATGGATGTGGATCCAAATGATGCGTATTGGAAAGATTTCATTGACCAACAATCTAACCAGCCATGGTCGACAGTCCAATGA 1101 0.3924 PTITIYNFLSSTTTSLTLIKVMMGRTGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLNLLTNLQHILAAANIVTTFTNPNHQINTALSLQNMLQPMPPAPSNLLNNLGSSFSSLSLPDTLLYEGLGLNVNDHSTLHNIIYNASNSAASSSQNQFQNFDQQQMMMTMMNGSRNNNNSSNCSESQNFDEQFGSTNATTTVTPSSSLPNLVSVSASPERSSSSPTKNNNNNIINSNSTFEIWGDFMDVDPNDAYWKDFIDQQSNQPWSTVQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2250 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Amo05g2250 366 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Amo05g2250 366 PANTHER MYB TRANSCRIPTION FACTOR 25 357 - -
Amo05g2250 366 Gene3D - 35 88 - -
Amo05g2250 366 SUPERFAMILY Homeodomain-like 33 130 IPR009057 -
Amo05g2250 366 SMART sant 88 136 IPR001005 -
Amo05g2250 366 SMART sant 35 85 IPR001005 -
Amo05g2250 366 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Amo05g2250 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 357 - -
Amo05g2250 366 Gene3D - 91 138 - -
Amo05g2250 366 MobiDBLite consensus disorder prediction 265 329 - -
Amo05g2250 366 CDD SANT 91 134 IPR001005 -
Amo05g2250 366 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Amo05g2250 366 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Amo05g2250 366 CDD SANT 38 83 IPR001005 -
Amo05g2250 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2250 Amo-Chr5 48206023 48208686 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2250 23 355 MYB Transcription Factor Family AT5G16770 46.667 3.10e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g2250 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2250 K09422 - gmx:547488 335.495