Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2245 GAGAGAGAGGAGACAATTAACAACTTAGCTTGTCTGGTAAATCTTCAAGTTCTTCCAACCATTACAATTTACAACTTTCTATCTTCCACCACCACTTCACTTACATTGATCAAAGTGATGATGGGAAGAACAGGAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACACCAGAAGAGGACAAGATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGATGCGGCAAGAGTTGCAGATTAAGGTGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAGTTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCGGTTCTTGGCAACAAGTGGGCAGCAATAGCAAGTCATTTGCCAGGGAGAACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATGACACACCGTCCAAGAACAGATCACCTTAATCTCCTTACCAATCTCCAACACATTCTTGCTGCTGCTAACATTGTCACCACTTTCACAAACCCTAATCATCAAATCAACACTGCTCTAACCCTTCAAAACATGCTTCAACCCATGCCTCCTGCACCCTCAAATTTACTCAATAATCTTGGATCATCATTATCACTGCCAGATACTCTTCTTTACGAAGGTTTAGGGTTGAATGTAAATGACCATTCTACCCTTCATAACATTATTTATAATGCTTCAAATTCAGCTGCTTCTTCATCTCAGAATCAGTTCCAAAACTTTGATCAACAACAGATGATGATGACGATGATGAATGGTAGCAGAAACAATAATAATAGCAGTAATTGCAGTGAGTCTCAGAATTTTGACGAACAATTTGGTTCAACAAATGCTACTACTACTACTACAGTCACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGTTCTTCTTCTTCTCCAACCAAGAATAATAATAATAATAATAATATTAACAGTAATTCCACCTTTGAAATCTGGGGAGATTTCATGGATGTGGATCCAAATGATGCGTATTGGAAAGATTTCATTGAGTAA 1122 0.3886 EREETINNLACLVNLQVLPTITIYNFLSSTTTSLTLIKVMMGRTGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLNLLTNLQHILAAANIVTTFTNPNHQINTALTLQNMLQPMPPAPSNLLNNLGSSLSLPDTLLYEGLGLNVNDHSTLHNIIYNASNSAASSSQNQFQNFDQQQMMMTMMNGSRNNNNSSNCSESQNFDEQFGSTNATTTTTVTPSSSLPNLVSVSASPERSSSSPTKNNNNNNNINSNSTFEIWGDFMDVDPNDAYWKDFIE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2245 373 MobiDBLite consensus disorder prediction 280 347 - -
Amo05g2245 373 CDD SANT 109 152 IPR001005 -
Amo05g2245 373 CDD SANT 56 101 IPR001005 -
Amo05g2245 373 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Amo05g2245 373 PANTHER MYB TRANSCRIPTION FACTOR 43 373 - -
Amo05g2245 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 101 IPR017930 -
Amo05g2245 373 Gene3D - 53 106 - -
Amo05g2245 373 SUPERFAMILY Homeodomain-like 51 148 IPR009057 -
Amo05g2245 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 156 IPR017930 -
Amo05g2245 373 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Amo05g2245 373 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Amo05g2245 373 ProSiteProfiles Myb-like domain profile. 49 101 IPR001005 -
Amo05g2245 373 SMART sant 53 103 IPR001005 -
Amo05g2245 373 SMART sant 106 154 IPR001005 -
Amo05g2245 373 Gene3D - 109 156 - -
Amo05g2245 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 43 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2245 Amo-Chr5 48148848 48150632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2245 41 373 MYB Transcription Factor Family AT5G16770 44.475 3.01e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g2245 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2245 K09422 - gmx:547488 329.717