Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2237 ATGATTCAGACTGCTGATATGAGACTTGAATCAGGGACTTGTAATGTGTGTTCAGCTCCTTGTTCATCTTGCACATATAACCATTCTCTCATGGGGTCAAAGGCTGAAGAATTTTCTGATGAAAACTGTCGTTTAGGGGAGGCCAATAATCACTGTTCTATGGACCAGAGCAATTTATCTTCTCTTAGGAGTAAAGCTTCTGAAAACTTGCAGCATGCTGTTAGTGAAACCAGTAACATTCTCAGTGTTAATTCTAGTCAGGATTCTCTATCTGAAAATGCCCAGAGTAAGCAGGTCTTGTCAGATAAGTATCAGGGCTCAAAATATTTAGAAGGCCATGATGATAACATTTCTAGTATTAGTAGAGCCAGTGATTCTAATTTAGAGAACACCAGCCATCAAAGAAATGCAGAAAGAATAAATGCTTGTAGTTCAGCTTCAGTTAGTCATGTAGGCGCAGAAGGATCTGTTGGTACTCCATCTGTTGATATGTCTGGTTTGTCTGAGATTCCATCCTCTAAAGATGCAGATAGTGGGCATAGCACATCTAAGGTACAAAGCATGAATGGACAATCTCAAAGTGGTAAATCTCTCTCAAATAGTGCAAGGTTAATTCATCCAGAAGGGAAATTATTGTCTCGTATCCCTGAAAAGTTGTTAGAAAGCCCTAATGAAAACCCTAATTCATCATTGAACAAAGAGGCAGCATCTACTGTTGTATCTGGTGAGAAATCAATTGCCAGTAATGATAGCCCTAATGACAGTATTGCCAAGGTTTCATCGGAAGTTTGTCCAAAGTCAGAAGCAGGTACTGATAACATAGGTGATGCTAAAGATGAAAGCTTTAAAGGTTCAGTCCGTGATGGACAGCATGAGAAGACTGAGGAGTTGGTTAAATCCCCTTTTAAGCAGGAACTTCAATCTGAAGATGAGAGTGATGAATTGGATGCTGTGGAACATGACGTAAAAGTGTGTGACATATGTGGAGATGCTGGTCGGGAGGATCTACTAGCTATATGCAGTAGGTGCAGTGATGGTGCTGAGCACACCTACTGCATGCGAGAAATGCTTCAGAAGGTCCCTGAAGGGGAATGGTTATGTGAAGAATGTAAATATGCAGAGGAGACTAGAAATCAAGGGCTTGAAGCTGAGGAGAAAATAATTCTTAAAGGTAGTTTAACTTCACAAGTTTCTAACAAACGACTTTTGGAAAACATTGAAGTAGCTTCTGCAGCAAAAAGGCAAGCTCTTGAATCAAGCACAGGGTCACCAAAGGCATCGAGTCCTAAAAGATTAGTCCCTCTGTCTCGTGAATCTTCGTTTAAGAACTTAGATAAAGGAAAGGTGAAGCCTGGTCATCTGATGCCTATTCATAATCATTCTAGCGGTGATGACACAGAAGTTGCTCGATCTCCTTCCATTGGTCCCCGAAGTCAAATTCCTAAGAGTACATTGTCGAAATGTAGTTCTTTCAACAACTTGAGTTCCAAGCCTAGAGTCAAAATTGTTGATGATGTTGTTCCCCAGAAACCGAAAGGGGCTGGTGATCAGTCTTCCAAGAATATGGAGATGCCTGCGCGCATGACAGGAAAATCAATGTTATTCAAATCGTCAAGTTTGGGTAGGTCAAGTACAACTGCACCAAAAGTTAAAATGCTTTCGCCCAAGTCTGCAACTGTCCAGGAGCCGAAAGGACTAAAACATATGAAAGAATCAGGTGCATTTGACAGGAAATTTCCAGCTAGGACTGATCGGCCTGTTGTTAGTTCATCAATAGCTAGTTCTGTTGTGTCTACAGCTAAGGGTGATCAGAAGCTAACATCTCGTGGTGAAACCACTAAACCTTCAGCAGTATGCAACAATCGAGAGTTGAGGGTTAACCAGGATGGAAAATCAAATACATCATATAAGTTAGTGAGTAATGTAAGTCAGAAAACTTTGGAGCCTCAAGTTTGCTCAGAGAAAACATCAACCAATATTGATGAAGCTGTACAGGACGTCCTGCCTCGGCCACGAGAGACAGCAAATCAGGTTGAGAAAACCAGAGGTGGTTCTGATGATCGTGTGAGGCCAGGTTTTAGTAATGCTTCAAAAAATCCAATCTGTCAAAAATGTAAAGAATATGGCCATGTTCTGGAATTTTGTACAGCTGGTAATACACAGGAATCTGGAGCTGAAGTATCATTCTCTGCTTCAAGTAGTTCAATTGAGGATATGCATAAGGGTAATAAATTGAAAGCTGCAATCCAGGCTGCCCTACTTAGAAGGCCTGAAATATACAAGAAGAAAGAAACACCTAATCAAACTGATGGGGTTTCTCCATCAGGCACAAACTTGAATGGTGAAGTCATTTTGCAAGACCAACCAATTGTTTCGAGCTCGCCAAAGAATATTGTATCAGCTGTAGAAACCCGGGAACAGCAAGAAATCCTTGAGAGTTCTACATCTGATTCGATCAAATGTTTGTCTGATGATGATTTGAAGCAACCTAAAGTTTCTCCAACTGGTTTTTGTTCTCAACCAGTAAAGTCAGATTCTGTTGGCCTTGCTGCTGGAAAGCCTGTAGTAAGAGATTTGTCTAATAAAGCTTTGGCCATCCCAATTGCCATTTCGAAGATGTTGGTCATTCCAGAATATGAATATATCTGGCAGGGTGTATTTGAAGTGCATCGAAATGGAAAGCCTCCTAATTTTTGTGCTGGAGTCCAAGCACATTTATCCTCTTGTGCTTCCCCAAAGGTTCGTCAGGAAGTGAACAAGTTTCTACCCAAAGTTACCCTGAATGAAGTTCCTCGTTTGAGCACATGGCCTTCACAATTTCGTCAAGTTGGCACAAGAGAAGATCATATTGCTCTTTACTTCTTTGCCAAAGATATTGAGAGTTATGAGAGGCACTACAAGGGTCTAGTGGATCACATGATTAGAAGTGATTTAGCACTTAAAGGAACTTTTGATGGTGTTGAACTTCTTATATTCCCGTCCAGTCAACTTCCTGAAAATTCACAGCGCTGGAATATGTTGTTTTTCTTATGGGGCGTATTTAGGGGGAGGAGGATCAGTCATTCAGATTCTACAGAAAAAAATTGTATTCCCAGTCTGAATGCAGTGCCAGTTGAAGAGGATTCTACTACTGCTGTTGTGACCAAGTCTGAAACACATTGCTCCCAAAAATACACAGATGAAAAAACAATTGCCTGTGATGAAGTATGCGCTGCACGTCCTCCATCTGGTTATATAGACCAACCTCGGATTACAGCAAGTATGATCAATGATAACAATGACCAGACACATCTGGGTTTGCAAGTAAAATTGGAGAAGCAAGATAGTGGAGTTGACATCAAATCTACATCAGTGGTTCCAATTGACAGTACATTTTTATGCCACGAGATGAAATCCACTGGTTCATCACTGAAACCTAATGGACTAGAACATGGACAGTGCAGAGAGTCTAAGCCTCCTGAAGCGATTGGGACCAGTGTAAATACAAGAACTGTTGAAACAAAAACTGGTTTTGACATTTCTGTAAAGCAAGAGAAAGCCTTGTTGACAGAGATTCCCTCTGTTGGCAAACAAGAAAGAGGTACTCCAAGCAGTGTTGTTATTCATAAAATGTCAGAGAGAGTGAACAATGACGAAGATCAGCAAAATCCCAGTATGAAACAGAAAGCAGATTATCACTATATTGACTTGGAAGCAACAGCTTCTTGCGATCAAGGAAAAGGTGCCGAAAGCCATTCGATTAAACAAAAAATTTCAGGGAGGATAAACAGTGATGAAGAAGGTCAGCAAAGGCCTAAGAGAAAACCAAAAGGTGTTTACTTTATTGACTTGGAGGCAACTGTTGGAGATCAAGAAACAGAGACTGCAAGCAATGACAGTAAGGATAGAATTTCTGAGAGAATCAATGGTGATGAAGATCAGCAAAGGCCTAAGACGAAGCAGAAAGATTATCATTATATTGACTTGGAGGCACCTGTAGACAATCATGACCAAGATTCTGCAAACAGTATTTGTAAGGATGAAGTTTTGGGGAGAATGGATGGCGAAGGTAAGCAATGGCCAAAGAAGAAACAAAAAGATTATCATTATATTGACTTGGAGGCAAACAATGAGGAGGAAGTTCAATATGTAGATCTTTCTGACACAGTTATGCAGGCTCCTGTAGTCAGTTGTCAGAAACGGTCTTGGGACGAGGTAAATGGAAAATTGGAAGATGGAGGAAGCTCTAGCAAGAAGCTGAAGGCAGGTTTTGGTGGGATTTATGGGGGTTCCAGTTCTGAAGGTAGGGACTCTCTTGAAATCGGTTCGTCTTCTTCAGTTGAGGGAAAAGGGTGTAAAGAAGCTTGTGAGGAGAAAATCATCCCTGAGGATGTTGGATCAATCGAAAGAACCTTCTTTCCCGTTGATAACTCGCGGATGGTGCTAAGCAGCACGTTGCTAAAAGGGCCTCATGAGTACAGGGACCGATTTCATGATGCAATTCCAAATCTAGAGCTTGGTTTAAGGGGCGAAACAATACCACCTCCACCTCCACCTCGACAGCGAATGCTTCCTTTCCTTGTTGGAGCACTAGACAGGAAAAACAGCCCAGAAATCCGTCCGGATGGCTTGGTAAACGAGCAGGAAGATGATGATGGTGATGCTGCATCTCTTTCACTTTCTCTATCATTTCCAACTTCCAACAAGGACCCAAAAATACCTGCTACAAAAGCAGCAGAGGTCTTACCTGATGAGCATCGTGTGAATAGTTCGTTCCTCCTTTTTGGAAGATACACAGACAAATAA 4785 0.4136 MIQTADMRLESGTCNVCSAPCSSCTYNHSLMGSKAEEFSDENCRLGEANNHCSMDQSNLSSLRSKASENLQHAVSETSNILSVNSSQDSLSENAQSKQVLSDKYQGSKYLEGHDDNISSISRASDSNLENTSHQRNAERINACSSASVSHVGAEGSVGTPSVDMSGLSEIPSSKDADSGHSTSKVQSMNGQSQSGKSLSNSARLIHPEGKLLSRIPEKLLESPNENPNSSLNKEAASTVVSGEKSIASNDSPNDSIAKVSSEVCPKSEAGTDNIGDAKDESFKGSVRDGQHEKTEELVKSPFKQELQSEDESDELDAVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLQKVPEGEWLCEECKYAEETRNQGLEAEEKIILKGSLTSQVSNKRLLENIEVASAAKRQALESSTGSPKASSPKRLVPLSRESSFKNLDKGKVKPGHLMPIHNHSSGDDTEVARSPSIGPRSQIPKSTLSKCSSFNNLSSKPRVKIVDDVVPQKPKGAGDQSSKNMEMPARMTGKSMLFKSSSLGRSSTTAPKVKMLSPKSATVQEPKGLKHMKESGAFDRKFPARTDRPVVSSSIASSVVSTAKGDQKLTSRGETTKPSAVCNNRELRVNQDGKSNTSYKLVSNVSQKTLEPQVCSEKTSTNIDEAVQDVLPRPRETANQVEKTRGGSDDRVRPGFSNASKNPICQKCKEYGHVLEFCTAGNTQESGAEVSFSASSSSIEDMHKGNKLKAAIQAALLRRPEIYKKKETPNQTDGVSPSGTNLNGEVILQDQPIVSSSPKNIVSAVETREQQEILESSTSDSIKCLSDDDLKQPKVSPTGFCSQPVKSDSVGLAAGKPVVRDLSNKALAIPIAISKMLVIPEYEYIWQGVFEVHRNGKPPNFCAGVQAHLSSCASPKVRQEVNKFLPKVTLNEVPRLSTWPSQFRQVGTREDHIALYFFAKDIESYERHYKGLVDHMIRSDLALKGTFDGVELLIFPSSQLPENSQRWNMLFFLWGVFRGRRISHSDSTEKNCIPSLNAVPVEEDSTTAVVTKSETHCSQKYTDEKTIACDEVCAARPPSGYIDQPRITASMINDNNDQTHLGLQVKLEKQDSGVDIKSTSVVPIDSTFLCHEMKSTGSSLKPNGLEHGQCRESKPPEAIGTSVNTRTVETKTGFDISVKQEKALLTEIPSVGKQERGTPSSVVIHKMSERVNNDEDQQNPSMKQKADYHYIDLEATASCDQGKGAESHSIKQKISGRINSDEEGQQRPKRKPKGVYFIDLEATVGDQETETASNDSKDRISERINGDEDQQRPKTKQKDYHYIDLEAPVDNHDQDSANSICKDEVLGRMDGEGKQWPKKKQKDYHYIDLEANNEEEVQYVDLSDTVMQAPVVSCQKRSWDEVNGKLEDGGSSSKKLKAGFGGIYGGSSSEGRDSLEIGSSSSVEGKGCKEACEEKIIPEDVGSIERTFFPVDNSRMVLSSTLLKGPHEYRDRFHDAIPNLELGLRGETIPPPPPPRQRMLPFLVGALDRKNSPEIRPDGLVNEQEDDDGDAASLSLSLSFPTSNKDPKIPATKAAEVLPDEHRVNSSFLLFGRYTDK* 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2237 1594 ProSiteProfiles Zinc finger PHD-type profile. 322 373 IPR019787 -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 1528 1566 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 590 615 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 673 687 - -
Amo05g2237 1594 SUPERFAMILY FYVE/PHD zinc finger 312 377 IPR011011 -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 538 552 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 1136 1156 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 161 201 - -
Amo05g2237 1594 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 203 1245 - -
Amo05g2237 1594 PANTHER - 1364 1585 - -
Amo05g2237 1594 SMART PHD_3 324 371 IPR001965 -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 1288 1315 - -
Amo05g2237 1594 PANTHER - 7 173 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 112 135 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 673 696 - -
Amo05g2237 1594 PANTHER - 203 1245 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 538 564 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 1236 1315 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 466 487 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 110 135 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 222 260 - -
Amo05g2237 1594 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1364 1585 - -
Amo05g2237 1594 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 173 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 415 487 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 151 315 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 272 308 - -
Amo05g2237 1594 MobiDBLite consensus disorder prediction 1252 1273 - -
Amo05g2237 1594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 384 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2237 Amo-Chr5 47998525 48007468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2237 321 383 C2H2 Transcription Factor Family AT3G01460 34.921 6.93e-07 52.4