Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2235 ATGTTGAAAACAGACAAATCTTGCAGGCTCCGATGGTGCAAACAGCTCTCCCCACAAGTGGAGCATCGGGCTTTCACCCCCGAAGAGGACGACACCATAATCAGAGCTCACGCTCAATTCGGCAACAAGTGGGCCACCATAGCCCGACTCCTTTTCGGCAGAACCGACAATGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAACCACTCAAACGCTCCGTTAGCGCCGGCGCCGCCATACTCGTGTCAACGGTCGTGGTGAGGTACTCGTTGCCGACGGTGATGGCGACGACGGTGATGGCGGGCAGGAAGGGGAGGATGCGGATGGAGAGCCAAGAGTGTGTAGTGGAGATGTCGGAGCTGATGTTGGCGACGCGGGAGTTCTCGAGGGAAACAATGAAATCAATGGCGGTGTTGGAGAAAGCTTGGAGGATTCAGGGTTAG 450 0.5578 MLKTDKSCRLRWCKQLSPQVEHRAFTPEEDDTIIRAHAQFGNKWATIARLLFGRTDNAIKNHWNSTLKRKPLKRSVSAGAAILVSTVVVRYSLPTVMATTVMAGRKGRMRMESQECVVEMSELMLATREFSRETMKSMAVLEKAWRIQG* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2235 149 SMART sant 21 69 IPR001005 -
Amo05g2235 149 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Amo05g2235 149 Pfam Myb-like DNA-binding domain 24 66 IPR001005 -
Amo05g2235 149 PANTHER MYB PROTEIN-RELATED 5 95 - -
Amo05g2235 149 SUPERFAMILY Homeodomain-like 3 75 IPR009057 -
Amo05g2235 149 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 71 IPR017930 -
Amo05g2235 149 CDD SANT 24 67 IPR001005 -
Amo05g2235 149 PANTHER TRANSCRIPTION FACTOR MYB73 5 95 - -
Amo05g2235 149 Gene3D - 24 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2235 Amo-Chr5 47976319 47977074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2235 3 95 MYB Transcription Factor Family AT5G67300 62.385 6.67e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g2235 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2235 K09422 - aip:107641435 167.548