Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2233 ATGCACCCCACGTGTTTGATTTTTGGTCTGGAAGCCTTAAATAGCACTGGTGGAGGCGGTGGAGTTGGAGTTGGTGTTGGTGGTGGTGGTGGTGGTGGTTGTAGTGGTAGTGGGGCAGGGATGATGAGTAGTACTAGCAGGTCGCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTCTGATTTACAAGTACATGGTGGCTGGTCTTCCTGTTCCTCCTGATCTTGTTATCCCCATTCAGAAGAGCTTTGACTCCATTTCCCATTCCTTCTTCCACCACCCTGCCCTGAGTTATTGTTCTTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGATGCAGGAGAACTGATGGGAAAAAGTGGAGGTGCTCTAAGGAAGCATACCCGGACTCCAAGTACTGTGAGCGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAATCTATGACACAGTCATCATCCACTGTGACATCACTGACTGCTACAACTGGTGGCAGCAGTGGAACTGGAAGTTACCAGAACCTTAACACAATTACCTTTGCTAATCCTCAAGGCACTGGTTCTGGAGCTGAACAGACACATTATCATTTGGATTCTATCCCCTATGGGATTCCAAGCAGAGAGTACAGGTATCTTCAGGGAAATAAATCAGAGGGTGGCGAACAGAGTTTCTTTTCCAAAGCTTTAGGAAGCAACAAGGAACTTCGGATCGAAACGCAGCTGGAAAACACTTTGATGCCAACCAGAGTTGCCTCCTTCTCAACATCAAGATCAAACAACAACTCCATTTTGCAGGGTGATTATCTGCAGAATTCATATTTATCCGACGAGCATGCATCGGGTGAATCTGTGAAGCATGAGGGTCAGTCTCTTCGACCTTTCTTTGATGAATGGCCTAGGAGCAGGGATTCATGGTCTGGTCTGGAAGCAACTCAGCTGTCCATGTCCATTCCTATGTCGGCGTCGAACTTCTCTACAGCCAGCTCTCAATCCTCGCATGGCGAGACTAAATAA 1038 0.4855 MHPTCLIFGLEALNSTGGGGGVGVGVGGGGGGGCSGSGAGMMSSTSRSPFTVSQWQELEHQALIYKYMVAGLPVPPDLVIPIQKSFDSISHSFFHHPALSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQSMTQSSSTVTSLTATTGGSSGTGSYQNLNTITFANPQGTGSGAEQTHYHLDSIPYGIPSREYRYLQGNKSEGGEQSFFSKALGSNKELRIETQLENTLMPTRVASFSTSRSNNNSILQGDYLQNSYLSDEHASGESVKHEGQSLRPFFDEWPRSRDSWSGLEATQLSMSIPMSASNFSTASSQSSHGETK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2233 345 MobiDBLite consensus disorder prediction 137 178 - -
Amo05g2233 345 ProSiteProfiles WRC domain profile. 110 154 IPR014977 -
Amo05g2233 345 PANTHER GROWTH-REGULATING FACTOR 5 46 336 - -
Amo05g2233 345 PANTHER - 46 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo05g2233 345 Pfam QLQ 49 83 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo05g2233 345 SMART QLQ_2 48 84 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo05g2233 345 Pfam WRC 111 153 IPR014977 -
Amo05g2233 345 MobiDBLite consensus disorder prediction 151 178 - -
Amo05g2233 345 ProSiteProfiles QLQ domain profile. 49 84 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2233 Amo-Chr5 47962769 47966985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2233 47 153 GRF Transcription Factor Family AT3G13960 63.964 4.20e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo05g2233 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2233 - - ahf:112749828 607.831