Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2196 ATGGATTCGGATGGTGAGAATGGGAGGAGGAAACCAGAATGTGAAGCGGTAGGAGCTCTGAATTCAAAGATGAAGGGTACTGGAAACCAGAGCAGCAAAGATATGATCTTCAGAGCTGATAAAATTGATCTCAAGAGTTTGGATGCCCAGTTAGAAAAGCACCTGAGCAAGGTTTGGTCGAGAACGATGAGCCTCGACGTTAAAAGGCCAAAGGAGGAGTGGGAGATTGATTTGGCCAAATTGGATTTAAGGTATGCAGTTGCTCATGGCGCTTATGGAACTGTTTACAGGGGCACTTATGATTCACAAGATGTTGCAGTGAAAGTTTTGGACTGGGGTGAGGATGGTGTAGCTACTGCTGCTGAAACTGCCGCTTTACGTGCATCTTTTAGGCAGGAAGTCGCTGTTTGGCACAAACTTGACCATCCAAATGTCACCAAATTTGTCGGAGCTTCAATGGGTACTTCAAATCTTAAGATTCCCCCGAAAAACCCTTCAAGTTTTGATAACAATCCTCCTCCCCCTTCAAGGGCATGTTGTGTCATTGTTGAGTTTCTCCCTGGCGGAACGCTAAAACAATACTTGATAAAGAATAGGAGGAGGAAACTTGCTTATAAGATTGTGGTACAGCTGGCTTTAGACCTTGCCAGGGGTCTTAGCTATCTACACTCAATGAGGATTGTTCATCGAGATGTTAAAACAGAGAACATGTTGCTAGATACCAGCCGGAAACTGAAAATAGCTGATTTTGGAGTTGCTCGTGTTGAAGCTTTGAATCCAAGTGACATGACGGGTGAAACCGGAACACTTGGATATATGGCGCCCGAGGTCCTGGATGGTAAACCTTACAACAGGAGATGTGATGTGTATAGCTTCGGCATCTGCTTGTGGGAAATTTATTGCTGCGACATGCCTTATCCAAATCTAAGCTTCGCTGATATATCGTCTGCAGTTGTTCGTCAGAATTTACGACCAGATATTCCGAGATGTTGTCCAAGTGGCATGGCAAATATCATGAAAAGATGCTGGGATGCGAATCCAAACAAACGGCCGGAAATGAAGGACGTGGTGACAATGCTAGAAGCACTGGATACAAGCAGAGGTGGGGGAATGATACCTGAAGATGAGAGTCCAGGTTGCTTCTGTTTTGCACCAGCCAGAGGTCCCTAA 1170 0.4521 MDSDGENGRRKPECEAVGALNSKMKGTGNQSSKDMIFRADKIDLKSLDAQLEKHLSKVWSRTMSLDVKRPKEEWEIDLAKLDLRYAVAHGAYGTVYRGTYDSQDVAVKVLDWGEDGVATAAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPPKNPSSFDNNPPPPSRACCVIVEFLPGGTLKQYLIKNRRRKLAYKIVVQLALDLARGLSYLHSMRIVHRDVKTENMLLDTSRKLKIADFGVARVEALNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPNLSFADISSAVVRQNLRPDIPRCCPSGMANIMKRCWDANPNKRPEMKDVVTMLEALDTSRGGGMIPEDESPGCFCFAPARGP* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2196 389 PRINTS Tyrosine kinase catalytic domain signature 183 196 IPR001245 GO:0004672|GO:0006468
Amo05g2196 389 PRINTS Tyrosine kinase catalytic domain signature 221 239 IPR001245 GO:0004672|GO:0006468
Amo05g2196 389 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Amo05g2196 389 PRINTS Tyrosine kinase catalytic domain signature 331 353 IPR001245 GO:0004672|GO:0006468
Amo05g2196 389 SUPERFAMILY Protein kinase-like (PK-like) 62 360 IPR011009 -
Amo05g2196 389 Gene3D Phosphorylase Kinase; domain 1 70 161 - -
Amo05g2196 389 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 10 383 - -
Amo05g2196 389 ProSiteProfiles Protein kinase domain profile. 81 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g2196 389 Pfam Protein tyrosine and serine/threonine kinase 84 360 IPR001245 GO:0004672|GO:0006468
Amo05g2196 389 CDD STKc_MAP3K-like 87 360 - -
Amo05g2196 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Amo05g2196 389 Gene3D Transferase(Phosphotransferase) domain 1 186 369 - -
Amo05g2196 389 SMART serkin_6 81 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g2196 389 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 383 - -
Amo05g2196 389 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2196 Amo-Chr5 47496229 47499923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2196 28 389 MAP Kinase Kinase Kinase AT3G22750 79.282 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Amo05g2196 PK_Tyr_Ser-Thr 1.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2196 - - gmx:100803917 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4380 19 160825564 160827853 Amo05g2196 05 47496229 47499923 PCT