Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2193 GATTCCCCTGTATTCAATTTCCTCAACGGTTTGTCGCCTATAAAGACCGAGAAGCCTGCTCAGATTGGTCAAACGTTTAGCTCGCTTAGCTTTCCATCCCCTCCGCGTGCTTTTGCTTCACCCAATCTCACCAGTTTCAAGGAATCAAAAGTGCTCAAGAGGCATAACCCTTTTGGGAAATCAAGTGACGTGGCTATTGCAGATTCATTTCATCCATATCATAACTCGAGGGAATCTCAGGGAAATTTTCATGATGGAATATCTGCAGTTGATGATTCGATTGCTCTACCTGGTGAGCACACAAACTTCTCAGCTGAGATACCACAGGCCTTAAAATATAATAATTGGGGTAACCCTGGCTATGATCCTAGTCATGAGGATAACTCTCTTGATTCAATTGAAGTCCTTAATCAGGAGTCGGGTGAATTTGATCCGAAGGGGCAAGAATTAGAGCATTGGGATAATTTAATCTCTGGAGATACTGACTTCTTCGTTTTCAATTCCCCAAATGAAGCAGCGGCTTTTAAGGATATAATGCAGAAGCCAGATTCCCATCTTATGCCTCTGGTACCGGAATCTTCCATATATAATGGTTTGAGCGATGATAGCAAAGCTAAAATAGAAGACTATCGTCCCGAGCCTTTAGCAGTCACAGACCAAATGCAGGACAAACATTACGTTGCCATGACTAGCAATACAAAGGAGAAAGCAGATGCTGAGTTTGCTTCTGTGATGAACCATAATAAGCGGAGGCGATGTCTAGACTTTGAGACGGCCAGTGTGCAAAGGAAGAACTCAGATCATAATTTAAAATCCGATTCTCTTGTACATTCTAATGAAAAGCAACTGGTTGCTGTAAAATGCAATAGCAGTTCACAGCAATGCAATATGCCTGCAGTTGGCTTAGATTTGAATGCACTTGCAGCCTTGAAGGGAGACAAAAAAGTCATAAGTAATGACAATTGGCCTTGTGAAATTCATGTTAATCTTCCTAGTTGCACTTCAGTGCAAATCTATACCAGTCATGAACATCATGATCCATTGGCAGTGGAGGTGGATTCATCAGACATTGGGCCTCAGCCAGTTGAGGATAGTTCCCATGCATCAGATTTCACTGTTGATGAAGATGTCAATCAGAATAGTCCCCAAAAGAAAACACATGGAGACTGCAAGCGTTGTAACTGTAAAAAGTCAAAGTGCTTGAAGCTATATTGTGAGTGCTTTGCTGCTCGTACCTACTGCACTGGCAACTGCTCATGTAAGAATTGCCACAACAAACTTGATCATAAAGACGAAGTCCTTCAAGCTCGCAAGCAGATTGAGTCTCGCAACCCTCTGGCTTTTACTCCTAAAGTCATTCCTGAACCTGAAATTGGGAATGACCCAAATAAAACTCCAGCACCATCACGACACAAGAGAGGATGCAACTGCAAGAAATCATCCTGCCAAAAGAAATACTGTGAATGCTTTCAGGCTGGTGTTGGATGTTCCATAAACTGTAGATGCGACACGTGTAAGAACACGTTTGGTAGAAAGGACGGTGAGTTGTCCCTTCTTTTACAAATTAAATACAAATTAAATACC 1584 0.4205 DSPVFNFLNGLSPIKTEKPAQIGQTFSSLSFPSPPRAFASPNLTSFKESKVLKRHNPFGKSSDVAIADSFHPYHNSRESQGNFHDGISAVDDSIALPGEHTNFSAEIPQALKYNNWGNPGYDPSHEDNSLDSIEVLNQESGEFDPKGQELEHWDNLISGDTDFFVFNSPNEAAAFKDIMQKPDSHLMPLVPESSIYNGLSDDSKAKIEDYRPEPLAVTDQMQDKHYVAMTSNTKEKADAEFASVMNHNKRRRCLDFETASVQRKNSDHNLKSDSLVHSNEKQLVAVKCNSSSQQCNMPAVGLDLNALAALKGDKKVISNDNWPCEIHVNLPSCTSVQIYTSHEHHDPLAVEVDSSDIGPQPVEDSSHASDFTVDEDVNQNSPQKKTHGDCKRCNCKKSKCLKLYCECFAARTYCTGNCSCKNCHNKLDHKDEVLQARKQIESRNPLAFTPKVIPEPEIGNDPNKTPAPSRHKRGCNCKKSSCQKKYCECFQAGVGCSINCRCDTCKNTFGRKDGELSLLLQIKYKLNT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2193 528 MobiDBLite consensus disorder prediction 359 379 - -
Amo05g2193 528 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 473 508 IPR005172 -
Amo05g2193 528 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 391 426 IPR005172 -
Amo05g2193 528 ProSiteProfiles CRC domain profile. 389 510 IPR005172 -
Amo05g2193 528 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 517 IPR044522 GO:0003700
Amo05g2193 528 SMART CXC_2 470 511 IPR033467 -
Amo05g2193 528 SMART CXC_2 388 429 IPR033467 -
Amo05g2193 528 MobiDBLite consensus disorder prediction 354 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2193 Amo-Chr5 47449709 47451850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2193 475 525 CPP Transcription Factor Family AT4G14770 49.020 1.83e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo05g2193 TCR 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2193 - - aip:107640306 977.622