Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2187 ATGACTTTTGTTGTAAAACAAGTGAAGAAGGTTGCATTGAGAGAGTTTTCACACTTAGAGAGGCTTGAAGCTCTAGTTGATGCAGAAAATGTTGGGTCTCAAAGAGTGCTGGAGAAGGCAGGTTTCCAAAAAGAGGGAGTACTAAGAAAATATTTGTTCCGCAAGGGAAAAAGCAGAGACACGATCATTTTCTGTGTTCTATCAACTGATCTTGATCACCAAATGAGTGAAGGGGTTTCTTGCAAAGAAGAGAGTAAGAGTATTGATCTAACTAGGATCACTCTTCGAGAAACGGATCTTTCTGATGTGGAAGATCACATGGTGTGGTCAAGCGATGAAAAGGTGACAGAGTTCTGTACTTGGGGGCCATACACCAGCAAAGAAGAAGCCATAGACTTCATCAATGGGATACCAAACATATTTTCATGGTATAGGGCCATCTGCCTTGACAATCAAGCAATAGGGTCGGTTTCTGTGTGCTTGCAAAGAGATAGATACAGAGAAAAAGTAGCTGAAGTCGGATATATTCTGGCTTCAGAGTACTGGGGAAAAGGGATTGTTACACATGTTCTAAAGCAAGTTGTTAAGATTGTATTCAGCATGTATCCTCAGGTAGAAAGGCTTGAAGCTCTCACTGACAATGAGAATTTGGCGTCTCAAAGGGTTTTGGAGAAAGCTGGTTTCCAAAGAGAGGGTGTTCTTAGGAATTATGTGTATGTGAAGGGCAAAAGCAGAGATGCTGCTTCTGCGTCTTCCAAACCAGATGCCATTGATCTCTCCCAACTCTGTCTTTCCGAACCAGAAGTCATTGATTTGACCCAACTCTCTCTTAGACCCCTTGGGCTTTCTGATCTCGATGATCTCATGGTGTGGACCAGTGACGAAAAAGTGGCCAACTTCTGCTCTTGGGAACCCTACACCAGCAAAGACCAAGGCATTGACTTCATTGAAAACGCTGCAGCCAGCTTTCTATGGCGCAGAGCAATATGCCTCAACGATCGTGCCATCGGCTGTATTACTCTGAGCTCGTATGCTGACGTCGACAAAGCAAGGGAAAAATCGGCGGAACTTGGCTATGTTCTGGGTTCCAACTACTGGGGCAAAGGGATTGTCACTGAGGCTGTAAAGCAAGCTATCAAGGCTGCATTCATCGAGTTCCCATACTTGGACAGGGTTGAAGCTTTGGTTGATGTTGAAAATTTAGGGTCTCAGAGAGTCTTGGAGAAGGCCGGTTTTCAAAGGGAGGGACTCCTCAGGAAATATCTCGTTCGTAAGGGGAAGAGCAGAGACACCTTCATGTTCAGTGTCCTCTTATCTGATCTTCATCCCCAGCTTTGA 1338 0.4462 MTFVVKQVKKVALREFSHLERLEALVDAENVGSQRVLEKAGFQKEGVLRKYLFRKGKSRDTIIFCVLSTDLDHQMSEGVSCKEESKSIDLTRITLRETDLSDVEDHMVWSSDEKVTEFCTWGPYTSKEEAIDFINGIPNIFSWYRAICLDNQAIGSVSVCLQRDRYREKVAEVGYILASEYWGKGIVTHVLKQVVKIVFSMYPQVERLEALTDNENLASQRVLEKAGFQREGVLRNYVYVKGKSRDAASASSKPDAIDLSQLCLSEPEVIDLTQLSLRPLGLSDLDDLMVWTSDEKVANFCSWEPYTSKDQGIDFIENAAASFLWRRAICLNDRAIGCITLSSYADVDKAREKSAELGYVLGSNYWGKGIVTEAVKQAIKAAFIEFPYLDRVEALVDVENLGSQRVLEKAGFQREGLLRKYLVRKGKSRDTFMFSVLLSDLHPQL* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2187 445 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 275 430 IPR000182 GO:0016407
Amo05g2187 445 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 93 246 IPR000182 GO:0016407
Amo05g2187 445 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 71 - -
Amo05g2187 445 Pfam Acetyltransferase (GNAT) domain 275 413 IPR000182 GO:0016407
Amo05g2187 445 Pfam Acetyltransferase (GNAT) domain 92 229 IPR000182 GO:0016407
Amo05g2187 445 PANTHER ACETYLTRANSFERASE (GNAT) DOMAIN PROTEIN 2 71 - -
Amo05g2187 445 Gene3D - 261 442 - -
Amo05g2187 445 Gene3D - 82 252 - -
Amo05g2187 445 PANTHER ACETYLTRANSFERASE (GNAT) DOMAIN PROTEIN 85 248 - -
Amo05g2187 445 PANTHER ACETYLTRANSFERASE (GNAT) DOMAIN PROTEIN 266 441 - -
Amo05g2187 445 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 15 67 IPR016181 -
Amo05g2187 445 Gene3D - 1 81 - -
Amo05g2187 445 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 274 437 IPR016181 -
Amo05g2187 445 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1 60 IPR000182 GO:0016407
Amo05g2187 445 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 85 248 - -
Amo05g2187 445 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 266 441 - -
Amo05g2187 445 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 92 248 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2187 Amo-Chr5 47399628 47403016 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Amo05g2187 Acetyltransf_3 2.2e-26 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2187 - - cam:101514530 400.208