LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g2186	ATGGCCGTCGGAAAAAACAAGCGCATCTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCCGCCGATCCCTTTGCCAAGAAGGATTGGTACGATATCAAGGCTCCTTCCGTCTTCCAGGTCAAGAATGTGGGCAAAACCCTTGTCACTCGTACTCAAGGCACGAAGATTGCCTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCACTTGCTGATCTTCAAGGGGATGAGGACCACGCCTTCAGGAAGATTAGGCTGAGAGCAGAAGATGTACAAGGAAGGAATGTGCTCACAAATTTCTGGGGAATGGATTTTACTACTGACAAGCTGAGATCGCTCGTAAAAAAATGGCAAACTTTGATTGAGTCTCACGTCGATGTGAAGACCACGGATAATTATACCTTGAGAATGTTCTGTATTGGGTTTACCAAAAGAAGGTTTAACCAGATGAAAAGAACCTGCTACGCGCAGTCTAGCCAGATTCGTCAGATTCGTAGGAAGATGAGAGAGATCATGACCAACCAGGCAACATCCTGTGATCTCAAGGAGTTGGTCCGTAAGTTCATCCCAGAAATGATTGGTAAAGAGATTGAGAAGGCTACATCTAGCATTTACCCTCTTCAGAATGTGTTCATCAGGAAAGTTAAGATACTCAAAGCACCCAAATTTGATCTTGGGAAATTGATGGAGGTTCATGGTGATTACTCCGAAGATGTTGGTACTAAGGTGGACAGGCCTGCTGATGAACCAATGGCTGAGGCTACTCCTGAAATTGTTGGGGCTTAA	786	0.4517	MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRMFCIGFTKRRFNQMKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADEPMAEATPEIVGA*	262

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g2186	261	MobiDBLite	consensus disorder prediction	1	20	-	-
	Amo05g2186	261	MobiDBLite	consensus disorder prediction	1	15	-	-
	Amo05g2186	261	MobiDBLite	consensus disorder prediction	240	261	-	-
	Amo05g2186	261	Pfam	Ribosomal S3Ae family	16	221	IPR001593	GO:0003735\|GO:0005840\|GO:0006412
	Amo05g2186	261	ProSitePatterns	Ribosomal protein S3Ae signature.	61	73	IPR018281	GO:0003735\|GO:0005840\|GO:0006412
	Amo05g2186	261	PANTHER	40S RIBOSOMAL PROTEIN S3A	1	261	-	-
	Amo05g2186	261	PANTHER	40S RIBOSOMAL PROTEIN S3A	1	261	-	-
	Amo05g2186	261	SMART	Ribosomal_S3Ae_2	15	221	IPR001593	GO:0003735\|GO:0005840\|GO:0006412
	Amo05g2186	261	Hamap	40S ribosomal protein S1 [RPS3A].	1	258	IPR027500	GO:0003735\|GO:0005840\|GO:0006412

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g2186	Amo-Chr5	47390258	47392311	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g2186	1	261	Cytoplasmic Ribosomal Protein Gene Family	AT4G34670	85.496	1.85e-161	446

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g2186	K02984		-	gmx:100818730	459.529

Showing 1 to 1 of 1 entries