Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2185 ATGGCGTCAAGATTTTGGACCCAGGGTGCGAGCGATTCTGAGGAAGAAAGCAGTGACTTTGATGAGGTTGAAGAGACGACGGCTGGTGAGGTCGATCCCGCTGCCAATAGGTATTTGACAACTGAGGTGAGTGACAGTGATGACTCGGATAGCCAACGGCGGGTTGTCCGGTCGGCAAAGGATAAGCGATTCGAGGAGATGGCTTCTACCGTTGATCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAGGAGAGCTTTGATAAGATCAACAAACAGCTTGAGAAGGTCATGCGTGTTACCGAGTCTGAGAAGGTCCCCAGTCTCTACATCAAGGTCCTGGTGATGTTGGAAGACTTTTTGGCTCAGGCTTTGGCCAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAACAATAAGCAATATGAGGAACTGATTAACAAATGCAGGGAGAGCCCTGAGAGTGAGGAGGAGAAAGAAGAGGAGGAATCCGAGGATGAGTATGAGAGTGATGGTGAGATTATCGAGCCGGATCAGCTTAAGGGAAGAGATGACCTGAAATCAGATTCTGAAGTCTCTCACTATGAAGATGAAAAGGTCGATGCTGGTGAGGGACCCTGGGACCAAAAACTTAGCAAGAGAGACAGACTTATGGATAGGCAATTCATGAAAGACCCTAGTGAGATCACTTGGGACACCGTCAACAAGAAATTCAAGGAGATTGTGGCAGCAAGGGGCAGGAAGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTTACAAAAGTTGCTAAAACACCTGCACAGAAGTTGGAGATCCTTTTTAGTGTGGTATCTGCCCAGTTTGATGTTAACCCTGGCCTAAGTGGGCACATGCCCATTAATGTTTGGAAAAAATGTGTGCATAACTTGCTGGTCATTCTTGACATTTTAGTGCAATACCCTAACATAGTTGTTGATGATGCTGTGGAGCCAGATGAGAATGAAACACAGAAGGGCCCTGACCATAATGGACCAATTCGCATTTGGGGAAACTTGGTCGCCTTCTTGGAAAGAATAGATGCCGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCACATACTCGTGAGTATGTTGAGAGACTCAGGGATGAGCCAATGTTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCGTTTACTACAAACCACAGGAGGTTTATGTTGCAATGAAAAAATTGGCGGAGTTGGCTGAAGATGGGGTTAATGAAGGGGCTGGTGAGGAGAAAGGGTTTGAGGATACAAGAATTCCCACTCCATTTATTGCTACTCCTGAGCTTGTGCCCCGCAAACCTACCTTCCCTGAGAACAGCAGGACTCTAATGGACATATTGGTTACCCTGATATACAAGTATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGACGAGTTCTCAATATCCCGTGATCTGCTGCTCATGAGCCACTTGCAAGACAGCGTTCAGCATATGGACATATCAACACAGATACTGTTTAACAGGGCTATGGCACAGTTGGGTCTATGTGCTTTTAGGGTTGGGTTGATTTCCGAAGCACATGGCTGTTTATCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAAAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACCGCTATGCTTCTTGAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAACTTCCGCCGCTTACTTGAGGTGAGTGACAAGCAAACGTTTACTGGTCCACCTGAAAATGTCAGAGACCATGTTATGGCTGCCACAAGGGTTCTTGCCAAAGGAGACTTCAACAAGGCTTATGACATCATTGTGTCTCTTGACGTTTGGAAGTTTGTTAGAAACAGAGATACTGTACTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACATATCTCTTTACGTTCTCATCATCTTATGATTCTTTGAGCCTTGATCAACTCACCAAATTTTTTTCTCTCTCTGTTGCTCATACTCATAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGACCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGCACTCTAGGTTGCAGGCATTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTTGCCGAGAGTAATGAAAGAGCAATGGAGGCAACCATAGGTGGTGGTGGATTGGATCTTCCTATGAGGCGTAGGGATGGCCAGGATTATGCTGCTGCTGCTGCTGGTGGAACCAACACTGGGAGTGGCAGGTGGCAGGACTTGGGTTCTCAGACAAGACAAGGTGGTGGGCGATATGGTAGTGGAGGTGGAAGGCCGTTGGCTTTAGGCCAAGCAGGTGGACCGAGCAGGACGTGGATCTGGTCGGTATCAAGATTCTGCGTATGGAGGTTCAGGCAGGACTCAAGGTGGTATCTCATTGAGGGGATCGCATGGTTAGCCTCAAGGGTGTGCGTGCTTAGCATGGATAGAGGCCAACAAATAATTTAA 2784 0.4634 MASRFWTQGASDSEEESSDFDEVEETTAGEVDPAANRYLTTEVSDSDDSDSQRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPSLYIKVLVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEESEDEYESDGEIIEPDQLKGRDDLKSDSEVSHYEDEKVDAGEGPWDQKLSKRDRLMDRQFMKDPSEITWDTVNKKFKEIVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVHNLLVILDILVQYPNIVVDDAVEPDENETQKGPDHNGPIRIWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYVAMKKLAELAEDGVNEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVTLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNIAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRVLAKGDFNKAYDIIVSLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKFFSLSVAHTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQALAFQLTEKLSILAESNERAMEATIGGGGLDLPMRRRDGQDYAAAAAGGTNTGSGRWQDLGSQTRQGGGRYGSGGGRPLALGQAGGPSRTWIWSVSRFCVWRFRQDSRWYLIEGIAWLASRVCVLSMDRGQQII* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2185 927 MobiDBLite consensus disorder prediction 133 152 - -
Amo05g2185 927 MobiDBLite consensus disorder prediction 153 172 - -
Amo05g2185 927 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo05g2185 927 MobiDBLite consensus disorder prediction 43 61 - -
Amo05g2185 927 Gene3D - 725 793 IPR036388 -
Amo05g2185 927 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 - -
Amo05g2185 927 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo05g2185 927 MobiDBLite consensus disorder prediction 173 190 - -
Amo05g2185 927 Coils Coil 142 169 - -
Amo05g2185 927 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Amo05g2185 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 870 - -
Amo05g2185 927 MobiDBLite consensus disorder prediction 838 869 - -
Amo05g2185 927 MobiDBLite consensus disorder prediction 131 229 - -
Amo05g2185 927 MobiDBLite consensus disorder prediction 191 229 - -
Amo05g2185 927 SMART PINT_4 718 806 IPR000717 -
Amo05g2185 927 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 861 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo05g2185 927 SUPERFAMILY "Winged helix" DNA-binding domain 713 788 IPR036390 -
Amo05g2185 927 Pfam PCI domain 657 785 IPR000717 -
Amo05g2185 927 MobiDBLite consensus disorder prediction 14 28 - -
Amo05g2185 927 MobiDBLite consensus disorder prediction 844 862 - -
Amo05g2185 927 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2185 Amo-Chr5 47364545 47368281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2185 1 882 Eukaryotic Initiation Factors Gene Family AT3G56150 69.231 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2185 K03252 - gmx:100781967 1425.61