Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2184 ATGGATCCTTCAAGCTCAGATTGTGTGCTGAATCTAGGCGATGTGGATTATGAATTTGAATCTAACGAAGTTTCTGAGCCTCTCTCTGTTGTTGATGACGAGCTTGTTCCGAAGGTCGGAATGACCTTTACGACCCTTGAAGATGCCGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCAACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACGATAGAGAATAACGACGAGGCCGATCTGTACGAAGACCGTCACATATGGGTTCCTATCTATCTGGACCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTACATCACCCGGAACAGCTCGCTCATTCAGTTCGTCAAACAGTACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATCGAAGCTCAGTTTCAAGATGCGTACACCCACGCAAAGTTTAGGGAAGTCCAAGCCCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTGGACAAGTTCGCGGTTACCTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATACATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCCTCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAAGCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAACAGGCTAGGTTCAAAGCTGGAGAAACAGATTGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGCGGCGCATTCAAGTTGCAGCCAATATCAGGGACAAGTTATAAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1542 0.4611 MDPSSSDCVLNLGDVDYEFESNEVSEPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNDEADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSILDKFAVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMEALKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLEKQIANATKKKKTKVLSEINLFDAASAAHSSCSQYQGQVINYQFRVPAAGDNSLGV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2184 513 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
Amo05g2184 513 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 164 408 IPR031052 GO:0006355
Amo05g2184 513 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo05g2184 513 Pfam SWIM zinc finger 309 333 IPR007527 GO:0008270
Amo05g2184 513 PANTHER OS03G0843700 PROTEIN 164 408 - -
Amo05g2184 513 SMART 26again6 311 338 IPR006564 GO:0008270
Amo05g2184 513 MobiDBLite consensus disorder prediction 420 454 - -
Amo05g2184 513 PANTHER OS03G0843700 PROTEIN 26 148 - -
Amo05g2184 513 ProSiteProfiles Zinc finger SWIM-type profile. 300 336 IPR007527 GO:0008270
Amo05g2184 513 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2184 Amo-Chr5 47312921 47315896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2184 FAR1 1.6e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2184 - - adu:110280503 652.514