Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2179 ATGCATAGATATGAAGTTTCCATGACCCAATTAAAACCGTTAATGGCTTCTTATTACCTTGATCTATTAATACATTGGGTTTTCATTGTTGTCATTCTTCTCATATCCCTGAAGCTTAAACCATTAGAGTCACAGAAATTAAATAATCCAAGACTGATGCAAGCTCATGCAGCACTTGAAGCATGGACACATTGCATGACCTCTGACCCAAACAAAATCACTTCCACATGGTCTGGCCCCAATGTGTGCAACTACACCGGCATCTACTGTGCACCAGCACCAGATGACTCCACCATTTTTACAGTGGCTGGAATTGACCTTAAGAATGCAAACATATCTGGTTCATTACCTGAAGATCTTGGCCTCTTAACCGACCTAGACTTCTTCCATATAAACTCCAATAGATTCACCGGTCCACTCCCTGAGAATTTTACCAAACTTGCTTATCTTTATGAGCTTGATATCAGTTTTAACCAATTCTCAGGACCCTTCCCACAATTCTCCTTACCACAAAACTTTGGGAACTCACCAGTTTCTGTTATGATATTATCAAACAATGATATAAAGGGTAGTATTCCATCAAGTGTGGCCAAAATGAAGGATACCCTTAATGAGATTATAATATCGAATACGGGACTAACGGGTCCATTACCCCAAGAAATAGGGTACTTAGACAAAGTGACAGTGTTTGATGTGAGCTTCAACAGATTGGAGGGAGAACTACCTGGAACCATGCAAGGAATGAAGAGCTTGGAACAGTTAGTTTTAAAGCATAACAATTTCTCAGGTGTGGTTCCTACCAGCATTTGTATGTTGCCTAAGTTGAAGCACTTTGATTGTTCAAATAATTACTTCCATGGTCCATTCCCAAAATGTCCCTTCATTAAACGAAAGCACAATCCGGGAAAATTCATGGGTTTCTAG 924 0.3972 MHRYEVSMTQLKPLMASYYLDLLIHWVFIVVILLISLKLKPLESQKLNNPRLMQAHAALEAWTHCMTSDPNKITSTWSGPNVCNYTGIYCAPAPDDSTIFTVAGIDLKNANISGSLPEDLGLLTDLDFFHINSNRFTGPLPENFTKLAYLYELDISFNQFSGPFPQFSLPQNFGNSPVSVMILSNNDIKGSIPSSVAKMKDTLNEIIISNTGLTGPLPQEIGYLDKVTVFDVSFNRLEGELPGTMQGMKSLEQLVLKHNNFSGVVPTSICMLPKLKHFDCSNNYFHGPFPKCPFIKRKHNPGKFMGF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2179 307 Pfam Leucine rich repeat 227 284 IPR001611 GO:0005515
Amo05g2179 307 Gene3D Ribonuclease Inhibitor 54 169 IPR032675 -
Amo05g2179 307 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 166 298 - -
Amo05g2179 307 Gene3D Ribonuclease Inhibitor 170 300 IPR032675 -
Amo05g2179 307 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 36 166 - -
Amo05g2179 307 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 36 166 - -
Amo05g2179 307 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 166 298 - -
Amo05g2179 307 SUPERFAMILY L domain-like 66 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2179 Amo-Chr5 47288009 47289058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2179 47 292 Leucine-rich Repeat extension Gene Families AT3G22800 51.211 1.15e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2179 - - ahf:112748057 524.628