Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2170 ATGCTGTCCAATCATTTTCAAAACGGCGTCGAAACGGTGAGGCACGCTTGGTCGCGGATCCCAAACTCCGAAGAATCACAGTTCGTCGACGACGCCGTTGGGCTTGTGAGGAAAAGCGATGGAAGCAGCGTTGAGAGCCTTGACTATGAAGTCATAGAAAATTTTGCTTATCGAGAAGAACAGGCGCGCAGAGGGAAGCTGTACGTGAGTTATTTGCTGGTGGTGAAATGGCTTTTCGCCTTGCTCATTGGCATTGGCACTGGTCTTGCTGCTGTTTTCATCAACTTGTCTGTTGAAAATTTTGCTGGCTGGAAATTCTCGTTGACATTTAGTATAATTCAGAAGTCATACATTGCTGGCTTTCTCCTATATGCCCTGATAAACTTGGTTTTGGTGTTTTCCTCTGTATATATTGTCACACAGTTTGCACCAGCTGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGGGTTGATATTCATGGGATTCTTCTTCTGAGAACTTTGATTGGAAAGATATTTGGCAGCATTGGATCAGTGGGAGGAGGCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGTTCCACTAAGTATCATATAAATTCAAGATGGTTTCAAGTATTCAGAAGTGATCGAGATCGACGAGATCTGGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTAACATCTTGGTGGAGGAGTCAACTTATGTGGCGTGTCTTCTTCACTTCTGCTATTGTTGCTGTTGTAGTGCGAACTGCAATGGGATGGTGTAAGAATGGAAATTGCGGACATTTTGGGTCTGGCGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTATTGGAGGCCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTTCTAGTTGGCGTCGAAACCACCTTCACAAAAAAGGGAGCCGAGTCAAGATTATTGAAGCATGCCTTGTCTCCCTTTTAACGTCAATTATTTCATTTTGCTTGCCACTTCTAAGAGAATGTAGTCCATGCCCGGAATCTGATCCTACTTCTGGTATTGAATGCCCACGTCCTCCTGGAATGTATGGGAATTATGTAAATTTCTTTTGTAGCAGTGACAAGGAGTATAATGATCTTGCGACTATTTTCTTCAATACACAGGATGATGCCATCAGGAATTTGTTCAGTGCGAAAACAATACATGAGTACAGTTCCCAAAGTCTGTTAACCTTTTTGGTTATGTTTTATAGTTTAGCAGTGTTGACGTTTGGTACTGCTGTGCCAGCCGGTCAATTTGTCCCTGGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAAAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCGTCTTTTCTTGGTGGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACAAATAACCTGAAACTTTTGCCCCTTATTATGCTTGTTCTTCTTATATCGAAGGCTGTGGGTGATGCTTTTAATGAGGGTCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGCGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTGATCTCGTTACCTCGGGTAGTTAAGGTTTCAGACGTAGTTTCCATTCTACGGAGCAACAAACACAATGGTTTTCCAGTCATTGATCACACAAGAAGTGGAGAATCACTTGTTATTGGATTAGTACTTCGGAGTCATTTGTTGGTAATCCTTCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACTCTCTGATCCCAGAGGTGGGGACAGGTCAATAAGGCATGATTCTCATGAATTTGCTAAGCCTGTTTCTAGTAAGGGGATATGTATCGACGATATACATCTAAGTCCAGATGACTTGGAAATGTACATAGATCTTGCTCCATTTTTGAATCCCTCACCATACATTGTCCCTGAAGACATGTCTTTGACAAAGGTGTACAATCTTTTCCGCCAACTTGGTTTGAGACATTTGTTTGTTGTTCCTCGACCATCTCGTGTGCTTGGTTTGATAACCAGAAAAGATTTGATGATCGAGGACACGGAAAATGTGAATACATTAGAGCTTCAGTCAACTAGTGTAAGGTCTCTGATGCTTTACTCCTTACTCATTTGGCACTCTATTCATCTTTTTAATAAATTTAAATATAATATTTTGAGTAGCCATATTCCTTTATACTCTAAAAGCAGTTTGAGTTTTTCTTTGTAG 2436 0.4163 MLSNHFQNGVETVRHAWSRIPNSEESQFVDDAVGLVRKSDGSSVESLDYEVIENFAYREEQARRGKLYVSYLLVVKWLFALLIGIGTGLAAVFINLSVENFAGWKFSLTFSIIQKSYIAGFLLYALINLVLVFSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHINSRWFQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKNGNCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYISSWRRNHLHKKGSRVKIIEACLVSLLTSIISFCLPLLRECSPCPESDPTSGIECPRPPGMYGNYVNFFCSSDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSSQSLLTFLVMFYSLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVISLPRVVKVSDVVSILRSNKHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHSPLLSDPRGGDRSIRHDSHEFAKPVSSKGICIDDIHLSPDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLMIEDTENVNTLELQSTSVRSLMLYSLLIWHSIHLFNKFKYNILSSHIPLYSKSSLSFSL* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2170 811 ProSiteProfiles CBS domain profile. 585 652 IPR000644 -
Amo05g2170 811 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g2170 811 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g2170 811 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g2170 811 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g2170 811 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo05g2170 811 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 753 - -
Amo05g2170 811 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 780 - -
Amo05g2170 811 Pfam CBS domain 598 646 IPR000644 -
Amo05g2170 811 Pfam CBS domain 707 753 IPR000644 -
Amo05g2170 811 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 780 - -
Amo05g2170 811 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
Amo05g2170 811 SUPERFAMILY CBS-domain pair 579 753 IPR046342 -
Amo05g2170 811 Gene3D - 594 760 IPR046342 -
Amo05g2170 811 ProSiteProfiles CBS domain profile. 706 763 IPR000644 -
Amo05g2170 811 SMART cbs_1 709 757 IPR000644 -
Amo05g2170 811 SMART cbs_1 595 647 IPR000644 -
Amo05g2170 811 CDD ClC_6_like 45 574 - -
Amo05g2170 811 Pfam Voltage gated chloride channel 132 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo05g2170 811 Gene3D Clc chloride channel 69 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2170 Amo-Chr5 47051748 47059490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2170 1 773 Ion Channels AT5G26240 83.463 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2170 K05016 - gmx:100811908 1407.12