Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2164 ATGCAGATCTATGACATCTTCCAGCTTCTACCATCCAAAATTCAGGTTGGAGTGTTTTCTGCTACCATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTTAAGCGAGATGAATTGACCCTTGAAGGTATCAAGCAGTTTTATGTGAATGTTGAGAAGGAAGAATGGAAGCTAGAGACACTCTGCGACCTTTATGAGACTCTGGCCATCACACAGAGTGTCATCTTTGTGAACACAAGGCGCAAGGTGGATTGGCTCACTGACAAGATGAGAAGCAACGATCACACCGTTTCGGCCACACACGGCGACATGGATCAAAACACTCGCGACATCATTATGCGCGAATTCCGGTCAGGCTCATCGAGAGTTCTCATCACCACTGATTTATTGGCTAGAGGCATAGATGTGCAGCAAGTGTCTCTGGTTATAAACTATGATCTGCCAACTCAACCTGAGAACTATCTTCACCGCATAGGAAGGAGTGGAAGGTTTGGAAGGAAAGGTGTTGCTATAAACTTTGTGACTTTGGATGATGCAAGGATGCTTTCTGATATTCAGAAGTTCTACAATGTCAATGTAGAAGAGTTGCCATCAAATGTTGCTGATCTCCTCTGA 642 0.4455 MQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVNVEELPSNVADLL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2164 213 SMART helicmild6 93 174 IPR001650 -
Amo05g2164 213 Gene3D - 1 48 IPR027417 -
Amo05g2164 213 PANTHER EUKARYOTIC INITIATION FACTOR 4A-11 2 213 - -
Amo05g2164 213 PANTHER RNA HELICASE 2 213 - -
Amo05g2164 213 Pfam Helicase conserved C-terminal domain 66 174 IPR001650 -
Amo05g2164 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 209 IPR027417 -
Amo05g2164 213 CDD SF2_C_DEAD 53 183 - -
Amo05g2164 213 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 52 213 IPR001650 -
Amo05g2164 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 44 IPR027417 -
Amo05g2164 213 Gene3D - 49 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2164 Amo-Chr5 46955519 46956400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2164 2 213 Eukaryotic Initiation Factors Gene Family AT1G72730 94.340 3.84e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2164 K03257 - gmx:100817948 413.69