Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2162 ATGGGTGTATTCACAGTTCTGACACGGTGTATTGTGCAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCAACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATAGGTGTAAATTGTACGATCTCTCGGGTGTATTTTACAGTCTGTGTTTGGGTGTATTATGCAGATCTGTACGAAGACCGTCACATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAATTCGTCAAACAGTACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTCGCGGTTACCTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCCTCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAAGCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGAGAAACAGATTGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGCGGCGCATTCAAATTCCAGCCAATATCAAGGACACGTTATAAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1464 0.4515 MGVFTVLTRCIVQPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSIGVNCTISRVYFTVCVWVYYADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNNSSNSTIIASEAGSKQRENQMLQIFIRSYRVQPNPPLKLSFKMSQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFAVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMEALKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLEKQIANATKKKKTKVLSEINLFDAASAAHSNSSQYQGHVINYQFRVPAAGDNSLGV* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2162 487 Pfam FAR1 DNA-binding domain 38 123 IPR004330 -
Amo05g2162 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 261 382 IPR031052 GO:0006355
Amo05g2162 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 159 223 IPR031052 GO:0006355
Amo05g2162 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 134 IPR031052 GO:0006355
Amo05g2162 487 ProSiteProfiles Zinc finger SWIM-type profile. 274 310 IPR007527 GO:0008270
Amo05g2162 487 MobiDBLite consensus disorder prediction 400 414 - -
Amo05g2162 487 PANTHER OS03G0843700 PROTEIN 261 382 - -
Amo05g2162 487 PANTHER OS03G0843700 PROTEIN 159 223 - -
Amo05g2162 487 PANTHER OS03G0843700 PROTEIN 19 134 - -
Amo05g2162 487 MobiDBLite consensus disorder prediction 394 429 - -
Amo05g2162 487 Pfam SWIM zinc finger 283 307 IPR007527 GO:0008270
Amo05g2162 487 SMART 26again6 285 312 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2162 Amo-Chr5 46939971 46942516 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2162 FAR1 1.5e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2162 - - adu:110280503 516.153