LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g2130	ATGCCAAATGCTGACAGGGTGGGACTGTTTTCGGCTATGACATTAGATATGGGAATACTTCTTGGGATCACTTGTGTTAACAGGAAAAATCAATTAGTATTGAAATCAGGGAAGAAGGACTACTCAACGGCGATTCTTGAGCGGAAGAAGTCGCCGAACCGTCTTGTGGTGGATGAAGCTGTCAACGACGACAACTCTGTCATGTCCATGCACCCTGATACCATGGAGAAGCTCCAGCTCTTCTGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAGAGTTGTGAGGTCGAATTTACGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCTTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACTGTGGAGTTTAAGGTCATTGAAAAGAGAGGATGAAGAGAGGCTGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAAAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGCAATAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGTAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCTAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAGCATGAAGCTCTCTGATGATGTTGTTCATTAA	1092	0.4377	MPNADRVGLFSAMTLDMGILLGITCVNRKNQLVLKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVMSMHPDTMEKLQLFCGDTILIKGKKRRDTVCIALADDTCEEPKIRMNRVVRSNLRVRLGDVVSVHQCLDVKYGKRVHILPIDDTIEGVTGNLFDAFLKLWSLRSLKREDEERLDEVGYDDVGGVRKQMAQIRELVKLPLRHPQLFKSIGVKPPKAIAVANETGAFFFCINGPEIMSKLVGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDLALRRFGRFDREIDIGVPDEVGRLEVLRIHTKSMKLSDDVVH*	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g2130	363	Pfam	Cell division protein 48 (CDC48), N-terminal domain	54	134	IPR003338	-
	Amo05g2130	363	Gene3D	-	137	170	-	-
	Amo05g2130	363	SMART	AAA_5	219	340	IPR003593	-
	Amo05g2130	363	CDD	AAA	189	337	-	-
	Amo05g2130	363	Gene3D	-	339	361	-	-
	Amo05g2130	363	PANTHER	CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E	172	361	-	-
	Amo05g2130	363	Pfam	ATPase family associated with various cellular activities (AAA)	223	337	IPR003959	GO:0005524\|GO:0016887
	Amo05g2130	363	PANTHER	CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E	35	169	-	-
	Amo05g2130	363	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	361	IPR027417	-
	Amo05g2130	363	SUPERFAMILY	ADC-like	50	134	IPR009010	-
	Amo05g2130	363	Gene3D	-	182	338	IPR027417	-
	Amo05g2130	363	PANTHER	AAA-FAMILY ATPASE	35	169	-	-
	Amo05g2130	363	PANTHER	AAA-FAMILY ATPASE	172	361	-	-
	Amo05g2130	363	ProSitePatterns	AAA-protein family signature.	308	326	IPR003960	GO:0005524\|GO:0016887
	Amo05g2130	363	Gene3D	-	33	136	-	-
	Amo05g2130	363	SMART	CDC48_N_2	54	137	IPR003338	-
	Amo05g2130	363	SUPERFAMILY	Cdc48 domain 2-like	136	167	IPR029067	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g2130	Amo-Chr5	46501067	46504061	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g2130	182	361	Calmodulin-binding Proteins	AT3G56690	44.162	2.72e-42	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g2130	K13525		-	gmx:547850	564.303