Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2119 ATGTGGTTAAGTAGTGTAGAGGCTTCGGAAAAGGAATTGATTCCAGGGTCGTTGGCTCCCGAGGATACAAAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTGAAAAGGATCAGAGTCGATGTGCACTATGTGGAGAGGGCTTCGATGAGTTTTACAGCCATGAAATGGATGAGTGGATGTATAGAGGATCCACATACCTTAAGGCACCCATGGGAACAACTTTGGGCACCCTGGACAGACATCAACTAAGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAACAGGTATTTGCTTTTTATATACGATCTTAGTTACATTATATTAGCTTACTACTACTATTATTTACTCTTCTTCTTTGTTTTCTTTGTGTTTGCAGGAAACCTACCAAGAGAGTAG 429 0.4219 MWLSSVEASEKELIPGSLAPEDTKEMKDEEELGVPAEKDQSRCALCGEGFDEFYSHEMDEWMYRGSTYLKAPMGTTLGTLDRHQLRPIVHSKCRSDSDSTMPSTNRYLLFIYDLSYIILAYYYYYLLFFFVFFVFAGNLPRE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2119 142 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 98 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo05g2119 142 MobiDBLite consensus disorder prediction 1 36 - -
Amo05g2119 142 MobiDBLite consensus disorder prediction 17 36 - -
Amo05g2119 142 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2119 Amo-Chr5 46354132 46354560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2119 1 98 C2H2 Transcription Factor Family AT4G04885 53.061 2.63e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2119 K14400 - adu:107488618 221.861