Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2117 TTAGAAAGAAGAAAACCGGTGGCTGTTCGATCATTTCTGAAATTTAAAGGATTTGCGGAGTCCATGTTTCCCACGAACGTGTTCGATTCTCATCAGCAGCACATGATGCTTGATATGTCATCGTCTCACAATGAGAGTGATTTGGGAATAAGGACCGGAGATGATGAGTTCTTTGACATTAAATCTGCTACTGAGATCATCATGGAAGCTCCTTCCGGTGATGATGAGCAAGATCCCAACCAACGACCCAAAAAGAAGGGTTACCATCGCCACACACAGCACCAGATACACGAAATGGAAGCGTTCTTCAAGCAGTGTCCACACCCAGATGACAAGCAAAGAAAGGAGCTGAGCCGTGAGCTGGGATTAGAGCCATTGCAAGTAAAGTTTTGGTTCCAAAACAAGCGGACACAGATGAAGGCACAACATGAGCGGCACGAGAACGCTATATTAAAGGCTGAGAATGAGAAGCTTCGTGCCGAGAACAGCAGATACAAGGAGGCCCTAAGCAATGCTACTTGCCCCAACTGTGGAGGACCTGCTGCCCTTGGTGAAATGTCCTTTGACGAGCAGCACCTCCGGATTGAGAACGCTCGTCTCAAGCAAGAGATTGATAGGATTTCGGGAATAGCGGAGAAATATGTTGGGAAGCCAGTGACTTCCTCTCACAATAGCAATCACATGGCTCCACATTCTCGGTCGCTTGATCTTGGAGTTGGTAGCTATGGTGGAGGATCACAGTCCTCAGCCGGCGGCATGGTTGGAGAGATGTATGGCGGCAGTGAGCTTCTGAGGCCGTTCCCAGTTCCTTGTGATTCGGACAAACCCAGGATTGTGGAGCTTGCTGTGGCAGCTATGGAGGAACTAACAAGACTAGCTCAGGTTGGAGATCCTTTGTGGGTCCAAAGCAACCAGCACTGTACTGAGATTCTAAACGAAGATGAATACTTGAGGACCTTTCCGCCTAGAGTTATAGGCCCAAAAGCGTTGGGCTTGAGATCTGAATCTTCAAGAGAATCCGCGGTGATTATCATGAATCACACTAAACTGGTTGAGATACTAATGGATGTGAACCAATGGTCAACAATGTTCTGTGGTATTGTGTCAAGAGCGTTGACACTTGAAGTGCTTTCAACCGGAGTGGCAGGAAACTATAACGGAGCGTTGCAAGTGGTGGCATCGCCTCTTGTTCCAAGCAGAGAGAACTATTTCGTAAGGTACTGCAAGGAACATCCGGATGGGAGATGGACAGTGGTAGATGTGTCGTTGGAGAATGAGAGCAGAAGCCGAAGAAGCAGCCGAAGAAGGCCCTCTGGCTGCTTAATTGAAGAACTCCCAAACGGCTACTCCAAGGTGACATGGATTGAGCATGTAGAAGTGGATGATAGAGGCGTGCATACCCTCTACAAGCCATTGGTGAAGTGCGGGCTGGCCTTTGGAGCTAAGAGGTGGATGGCGACGTTAGAGAGACAATGCGAACGTGTTGCGAGTTACATAGGAGGAGGAGCAGGGGAGCTGTGTGGTACGAGTGCGGAGGGAAGGAGGAGCATGCTGAAGTTGGCAGAGAGAATGGTGATGAGCTTCTGCACTGGAGTGGGAGCTTCCACGGCACATGCATGGACGACTCTGTCGTCGGATATGGATGATGTGAGGGTTATGACCAGGAAGAGCATGGACGACCCTGGCAGACCCCCTGGCATTGTCCTCTGCGCTGCCACTTCCTTCTCCCTCCCTGTTCCTCCCAACACTCTCTTTCATTTCCTCAGAGATCAAAACTCCCGAAGCCAGTGGGATATCCTCTCCAACCGAGGCCTTGTTCAAGAAATCACACACATAGCAAGCTCTTCCAACGCGCTCTCTCTGCTTCGCGTCAATAGTGTGAATTCGAGCCAAAGCAACATGCTGATACTTCAGGAGAGTTGTACAGACTGCAGTGGATCCTATGTGGTATATGCACCCGTGGACATGGCTGCCATGAATATAATTCTTAGTGGCGGGGATCCAGATTACCTGGCCCTGCTTCCCTCGGGTTTTGCGATTCTTCCTGATGGCCTTGCTGCATCTTCTGGAGGCTCTCTCCTCACGGTTGCGTTTCAGATCTTGGTTGACTCCGCCCCAACCGCCAAGCTATCCCTGGGTTCAGTCGCCACTGTTAACACTTTAATTAAGTGCACCGTTGAAAGGATCAAAGCTGCTGTCGTTTCTGACACCACCTCATTTCACAACCTTGCTTCCTAG 2238 0.4987 LERRKPVAVRSFLKFKGFAESMFPTNVFDSHQQHMMLDMSSSHNESDLGIRTGDDEFFDIKSATEIIMEAPSGDDEQDPNQRPKKKGYHRHTQHQIHEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENSRYKEALSNATCPNCGGPAALGEMSFDEQHLRIENARLKQEIDRISGIAEKYVGKPVTSSHNSNHMAPHSRSLDLGVGSYGGGSQSSAGGMVGEMYGGSELLRPFPVPCDSDKPRIVELAVAAMEELTRLAQVGDPLWVQSNQHCTEILNEDEYLRTFPPRVIGPKALGLRSESSRESAVIIMNHTKLVEILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVVASPLVPSRENYFVRYCKEHPDGRWTVVDVSLENESRSRRSSRRRPSGCLIEELPNGYSKVTWIEHVEVDDRGVHTLYKPLVKCGLAFGAKRWMATLERQCERVASYIGGGAGELCGTSAEGRRSMLKLAERMVMSFCTGVGASTAHAWTTLSSDMDDVRVMTRKSMDDPGRPPGIVLCAATSFSLPVPPNTLFHFLRDQNSRSQWDILSNRGLVQEITHIASSSNALSLLRVNSVNSSQSNMLILQESCTDCSGSYVVYAPVDMAAMNIILSGGDPDYLALLPSGFAILPDGLAASSGGSLLTVAFQILVDSAPTAKLSLGSVATVNTLIKCTVERIKAAVVSDTTSFHNLAS* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2117 745 MobiDBLite consensus disorder prediction 69 93 - -
Amo05g2117 745 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Amo05g2117 745 Pfam START domain 281 494 IPR002913 GO:0008289
Amo05g2117 745 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Amo05g2117 745 SUPERFAMILY Bet v1-like 512 730 - -
Amo05g2117 745 SUPERFAMILY Bet v1-like 272 496 - -
Amo05g2117 745 SUPERFAMILY Homeodomain-like 69 142 IPR009057 -
Amo05g2117 745 Gene3D - 337 493 IPR023393 -
Amo05g2117 745 CDD homeodomain 85 143 IPR001356 GO:0003677
Amo05g2117 745 ProSiteProfiles START domain profile. 540 623 IPR002913 GO:0008289
Amo05g2117 745 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 737 IPR042160 -
Amo05g2117 745 SMART START_1 280 494 IPR002913 GO:0008289
Amo05g2117 745 Coils Coil 136 171 - -
Amo05g2117 745 CDD START_ArGLABRA2_like 275 493 - -
Amo05g2117 745 SMART HOX_1 84 146 IPR001356 GO:0003677
Amo05g2117 745 ProSiteProfiles START domain profile. 271 497 IPR002913 GO:0008289
Amo05g2117 745 Gene3D - 71 158 - -
Amo05g2117 745 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Amo05g2117 745 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 39 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2117 Amo-Chr5 46313100 46315822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2117 22 736 Homeobox Transcription Factor Family AT4G21750 69.582 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g2117 START 5.6e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2117 K09338 - gmx:100815499 1053.89