Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2079 ATGTCAGAACAGATGCACAAATTTGATCCAGGAAGTCAGCAGTTTGAATTCTCAGAAAATACAAATCAGATTGGTTCTTCATGTTTAGAAAGTGAACAAAAGGTGCTAATCACTATGAAGAATAGGACTGTCTTTGATGAAAAGTTACATCAAGGTTCTGATAATATGAGAGGGAATTCTCTTATTCAACTATCTGCTCCTCCTCAATATGTTTTGGTAAAGAGTTCTCAGATTGGAGAAGGTTCTTGCGACAAAAAAGTTACCGTCGGGCCAGAACTGGCCTTTCGAGATTTATCCGATTATAACTTACAAAGGAAATCTCAACCAGCCTCCCAAAATGTTCAAAATGGATCCGTAGAATCAACTAACTCAATAAGTAGCCTTTTTGTTCAGGATCAAATGCAGCCGAGTCCTGCACAAGAGAACATGAGCTCAGTGATTGAACACTTGGACCTGCCTACTGGGGATGTTGCAGGAAATGATGGTCCTAACTGTTTACAAAGAAAGTCTAAAAGGCTGACTCAAATGAGGTTAAAGTCGGAGGACAGCAGAACTCCAAAATTACTGAAGGGAAAATATATACTTAGGTCTTCGAGAAGCAGTGACAGAGCTTTGCAGTCGCAGACTCGAGAAAAATGTAAAGTACCTGAACTAAGTAGCGACTTGATTGATGTTAAAAATGTTGGAGAGAAGAAGAGAAGAGGGAGGAAGAGAAAACAATGGGGAGGAGAGGGAATTATTGATGAATTTTCAAGAATAAGGAGTCACTTACGATATTTATTGAACCGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGCATTGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATTCTTAGGAGAAAATTGAAAATCAGGGATCTATTTTGGAATTTGGGTTTATTGTGTGCTGAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCGGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAATGCTGTTTAAATCCTCCATTGTTAACTAAAGACATTCCGCCGGGCCATGATATTTGGCTATGCCCAGGATGTAACTGCAAACTTGAATGCATTAAACTTCTTAATGACTTCTTAGGAACAAGTCTTTCTATTAGGGACACCTGGGAGCGGGTTTTTCCTGAAGCAACAGAGGCTGCTGGAACTAATGCGGGCCATAACCTGGGACTTCCTTCAGTTGATTCTGATGACAACGATTACAAGCCTAAAGCTCCGGAAGATGAAGAGGTTGAAGGTGGAGAATCAAGCTCTGATGGATCTGATTATGCTTCTGATTCTGAGAAATTGAAAGATTTGCATTCAGAGGATGATGATTATGATCCAAATGCTCCAGATACTGATAGGGGAGCCTCTGAAGAAAATTCAAGCTCTGGTTTCATATCTGATGACACTGTGGACGAAGCTCAAATGCTTGCACCACAGGATGATATTATGAAGTGTAAAAGCTCTCGCAGTAAAAAGTTCAAAGTTGGTTAG 1617 0.4045 MSEQMHKFDPGSQQFEFSENTNQIGSSCLESEQKVLITMKNRTVFDEKLHQGSDNMRGNSLIQLSAPPQYVLVKSSQIGEGSCDKKVTVGPELAFRDLSDYNLQRKSQPASQNVQNGSVESTNSISSLFVQDQMQPSPAQENMSSVIEHLDLPTGDVAGNDGPNCLQRKSKRLTQMRLKSEDSRTPKLLKGKYILRSSRSSDRALQSQTREKCKVPELSSDLIDVKNVGEKKRRGRKRKQWGGEGIIDEFSRIRSHLRYLLNRVSYEQSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFWNLGLLCAEGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGACDRGFHQCCLNPPLLTKDIPPGHDIWLCPGCNCKLECIKLLNDFLGTSLSIRDTWERVFPEATEAAGTNAGHNLGLPSVDSDDNDYKPKAPEDEEVEGGESSSDGSDYASDSEKLKDLHSEDDDYDPNAPDTDRGASEENSSSGFISDDTVDEAQMLAPQDDIMKCKSSRSKKFKVG* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2079 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 397 IPR013083 -
Amo05g2079 538 MobiDBLite consensus disorder prediction 443 457 - -
Amo05g2079 538 SUPERFAMILY FYVE/PHD zinc finger 333 400 IPR011011 -
Amo05g2079 538 ProSitePatterns Zinc finger PHD-type signature. 341 392 IPR019786 -
Amo05g2079 538 SMART PHD_3 340 393 IPR001965 -
Amo05g2079 538 MobiDBLite consensus disorder prediction 495 510 - -
Amo05g2079 538 Pfam PHD-finger 340 395 IPR019787 -
Amo05g2079 538 MobiDBLite consensus disorder prediction 468 494 - -
Amo05g2079 538 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 126 510 - -
Amo05g2079 538 PANTHER HOMEOBOX PROTEIN HAT3.1 126 510 - -
Amo05g2079 538 CDD PHD_PRHA_like 340 392 IPR045876 -
Amo05g2079 538 MobiDBLite consensus disorder prediction 425 538 - -
Amo05g2079 538 ProSiteProfiles Zinc finger PHD-type profile. 338 395 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2079 Amo-Chr5 45171971 45183487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2079 248 476 Homeobox Transcription Factor Family AT3G19510 59.504 1.07e-88 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo05g2079 PHD 3.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2079 - - adu:107488674 1044.65