Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2044 ATGGAAGAGAAAGATGAAGATGAAGTGGTGTCATGTTCTTCTTCTTCCGATGAGGAATACGAAGAATGTTCCTCTCCGGCGGACGACCAACGCAAATCGCAGAATGTGGATGCTCTCCTCAGGGGCAACCTCATAGTTAAGAGGCAGTCACTGCTACCTCGAGTTCTATCAGTGGGAGGAGCAGGTGCTTGTAGAAAGCCCTTTAAACCTCCGTCGTCCAATCACACTTACGATAATGATAATGCGCTTACCCGTCGCCTTTCCGCCCGCAAGAGGTTTGTCCCTTGGGGTTCTTCTACTTGTTCACCCCGACCCCCTCTCTTGGACTTGAACGCAAATGAAAATGCAAACTCCTTTCACCTTGCCGACGASCAGCCTCACSACAAAATCRAACTTCCTTTGCCCYCTGGCATTGATCYTCTCATACTCTGGCGCKCCCTCGACGAGAATCAAAYTTCCAATTTGACCACCATTGCAGTTGACCCGTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGAGTTCAGTTCATGTTTGATTGTGTCTCTGGCCTGTGTAGCGCAGACAATATAGATGGATGCATTTTGGCTGATGATATGGGTTTGGGGAAGACATTGCAGTCAATTACATTACTATATACTCTAATTTGCCAAGGATTTGATGGGAATCCACTTGTTAGAAAGGCTATCATTGTAACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAGATCAAGAAATGGATTGGAGAAAGAGTTCGTCTTCTTGCTCTCTGTGAAAGCACTAGAGAAGATGTTCTCTCTGGGATTGACAAGTTTACAAGGCCCCACAGCACTATACAGGTGCTCATTGTTTCGTATGAGACATTCCGAATGCATTCGTCAAAGTTTAGCTCTAGTGGCTCTTGTGACCTCCTTATCTGTGATGAGGCTCACAGACTAAAGAATGATCAGACGATAACAAACAGGGCATTGGCAGCTCTTCCATGTAAACATAGAATTCTATTGTCAGGAACTCCTTTGCAGAATGACTTGGAGGAATTCTTTGCGATGGTTAATTTTACTAATCCTGGAATACTGGGTGATATTGCCAATTTTCGACGTTACTATGAGGCTCCAATCATCAGTGGAAGAGAACCAGATGCCACTAAAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCAGAATTAAGTGCCAAAGTAAATCGGTTCATATTAAGGAGGACTAATGCATTATTATCTAATCACTTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCCTTACAGTCCGACCTTTACAAACATTTTATACAATCCAAAAATGTTAGACGTGCAATTAATGAAGAACAGAAGCAATCCAAGATCTTGGCCTACATAACAGCTCTCAAAAAGCTATGCAATCATCCAAAGTTGATCTACGATACCATAAAAAGTGGGAGTCCCGGAAATTCAGGTTTTGAAGACTGCCTTCGATTCTTTCCTCCACAAATGCTATCTGGAAGGTCTGGCTCACGGACAGGAGAGCATGGAGCTTGGGTCGAGCTATCTGGGAAAATGCATGTCTTAGCAAGGTTACTTGCTCATTTACGTCAGAGAACAACTGATCGCATTGTCTTGGTCTCAAACTACACTCAGACACTCGATCTTTTTGCGCAATTGTGTCGGGAACAAGGGTACCCTTACCTGAGGCTTGATGGTGCTACATCAATCAAAAAAAGGCAGAAGTTGGTCAACTTCTTTAATGACCCATCTAAGGACGAATTTGTTTTTCTGTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTGTTGTTTGATCCTGACTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAGTCTGGAGGGATGGACAGAAGAAAAGAGTATATATTTATAGATTTTTGAGTACTGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGTTGCAAAAGGTCATTCAGAAGGAGCAAACTGATAGCCTTGCGGCACAGGGTAACTTCCTTTCAACAGAGGATCTTCGCAATTTGTTCACCTTTCATGAGAATGCCAAGTCGGAGATTCATGAAAAGATGTGTTGCACTCGATGTCAAACAGATGATGCACCTCAAACTACTGAAAAGAAATACGCAGCCCCTGATTGTGAATCTGATGAAGAAACCACTGACATAGGTGGATTTGCAGAAATTGCTGGCTGCATAGAGAAGTTAAAAAGGTCAGAAAAGCAGGTGGGGACACCATTGGAAGAAGATTTAGGCAGTTGGGGCCATCACTTTTCCTCGGCTTCTGTACCGGATGCCATCCTTCAGGCTTCAGCTGGTGATGAGGTGACCTTTGTGTTCACAAATCAAGTTAATGGACGGCTGGTACCTATTGAATCTACAAGCAGTTCCGCACCGCGGCAAAAGGAAACTAATAAGGAATTAGCCAAGTTAAAGCTTCGCTTCACACGAAAGCCCGCTATTTTTTCTGAGGATAATAATAAATTGTCACTGCGGTCCGTTTCTGGTGTTGCTTGTGCATCATCTTCCTCTCCCAATACCTTTGAAAAGGAAAAACTGCATTCTATTGGAATTACCAAGGGCATCTCAACGAATGTAGCAGCATTTAAGACCGATTACTCCGTTGTAAATAAATCACCACCGCAGAAAAGATCACGTCCTGCAAATGTCGATACACAATAA 2736 0.4357 MEEKDEDEVVSCSSSSDEEYEECSSPADDQRKSQNVDALLRGNLIVKRQSLLPRVLSVGGAGACRKPFKPPSSNHTYDNDNALTRRLSARKRFVPWGSSTCSPRPPLLDLNANENANSFHLADXQPHXKIXLPLPXGIDXLILWRXLDENQXSNLTTIAVDPLLVRFLRPHQREGVQFMFDCVSGLCSADNIDGCILADDMGLGKTLQSITLLYTLICQGFDGNPLVRKAIIVTPTSLVSNWEAEIKKWIGERVRLLALCESTREDVLSGIDKFTRPHSTIQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKHRILLSGTPLQNDLEEFFAMVNFTNPGILGDIANFRRYYEAPIISGREPDATKEEKKLGAERSAELSAKVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVRRAINEEQKQSKILAYITALKKLCNHPKLIYDTIKSGSPGNSGFEDCLRFFPPQMLSGRSGSRTGEHGAWVELSGKMHVLARLLAHLRQRTTDRIVLVSNYTQTLDLFAQLCREQGYPYLRLDGATSIKKRQKLVNFFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQKEQTDSLAAQGNFLSTEDLRNLFTFHENAKSEIHEKMCCTRCQTDDAPQTTEKKYAAPDCESDEETTDIGGFAEIAGCIEKLKRSEKQVGTPLEEDLGSWGHHFSSASVPDAILQASAGDEVTFVFTNQVNGRLVPIESTSSSAPRQKETNKELAKLKLRFTRKPAIFSEDNNKLSLRSVSGVACASSSSPNTFEKEKLHSIGITKGISTNVAAFKTDYSVVNKSPPQKRSRPANVDTQ* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2044 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 409 IPR027417 -
Amo05g2044 911 Pfam Helicase conserved C-terminal domain 528 636 IPR001650 -
Amo05g2044 911 MobiDBLite consensus disorder prediction 1 15 - -
Amo05g2044 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 800 IPR027417 -
Amo05g2044 911 Gene3D - 142 408 IPR038718 -
Amo05g2044 911 SMART ultradead3 164 372 IPR014001 -
Amo05g2044 911 CDD DEXHc_RAD54 168 409 - -
Amo05g2044 911 PANTHER SNF2/RAD54 FAMILY MEMBER 34 812 - -
Amo05g2044 911 Gene3D - 431 700 - -
Amo05g2044 911 CDD SF2_C_SNF 520 648 - -
Amo05g2044 911 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 34 812 - -
Amo05g2044 911 SMART helicmild6 553 637 IPR001650 -
Amo05g2044 911 Pfam SNF2-related domain 171 477 IPR000330 GO:0005524|GO:0140658
Amo05g2044 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 359 IPR014001 -
Amo05g2044 911 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 687 IPR001650 -
Amo05g2044 911 MobiDBLite consensus disorder prediction 1 34 - -
Amo05g2044 911 Gene3D - 409 721 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2044 Amo-Chr5 44159317 44166642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2044 517 695 RAD5 or RAD16-like Gene Family AT5G43530 35.556 1.48e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo05g2044 SNF2_N 2.4e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2044 K10875 - gmx:100781631 1327.77