Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2031 ATGAAGTTGAACAAGATACAGTGTACTTTGAAGAAGGAGGTCATTAATCAATTCGGAGAAATTCTCAAAGAAGGAGAGCTGTATTCTATATCTCGAATCACGGTAGTTCTGAATATTGGTGCAGCAAAAGTTGTAAAGCATCGATATAAGTTGCTTTTTCGGTTTGACACGGAGGTTATTCCAATTTCTAATGTTCATTTTCCAAAGGCTTCATATTCATTAGAGACTGTTGAGAGTGTTGTTCATATGGGACAAGATTCAATATACTTGATTGATGTCATGGGTTTCTTGATAAGTGTTCGTGACTATTCTGATGTTGAACTTGACAATGGGAAAAAGTTTAAATTAGTTCTCATCCAATTGTATTCAAATGGCTCTTATCTCATCTGTAATTTACTTGGAAATTTTTTAACAAAGATGCGGTTGGCTCTTATGAATGCTGTCTCACAACCGCCAATCATTTTACTACAATCTGTCAAGGTCAAGATTTATGAAGGGAAGGTTGTAGTACAGAATGTAATAGATTGTAGCAAAATCATAATCAATCCTGATATTTCAAAGGCTTTATATTTCATTGACTCTATCACCCTCGGTAATGGATTTGTTGTTGCTGATGTCGATGATGATTTTGTCAATCTCTTTATGAATGGGAGTATTAAGGAATTAAGAGAAAATGATGCGGATGGTTTCTTCAATTTTGTTGCAAAGATTAAAAGTTTATGCAACAATTTCGATTGGTGGTACTACTCATGTGTCTGTGGTTATCCTTTGGAGCTTTTTAGAAGTCGTTTCAGTTGTTTCGAATGTGCAAGGAAAATAAAGAATGCTGTGAAGAAGTACAAGGTTTTAGTAGATGTTAAGGATGCTACTGGAAGTGCTAGATTTGTTTTGTATGATCGTTTCGCAGCGCTCTTGATGGTGTTTTTGCGGAAAAATGAATTTCCAACACACAAATCCAACCGGCAAGCATACCGGGTCGCATCAAGTAGTAATAACTCACTTAGAGTGAGGTCGATCCCACAGGGATTGATGGATCAAGCAATTTTAGTGGGTTCGACCTCACTCTAA 1068 0.3633 MKLNKIQCTLKKEVINQFGEILKEGELYSISRITVVLNIGAAKVVKHRYKLLFRFDTEVIPISNVHFPKASYSLETVESVVHMGQDSIYLIDVMGFLISVRDYSDVELDNGKKFKLVLIQLYSNGSYLICNLLGNFLTKMRLALMNAVSQPPIILLQSVKVKIYEGKVVVQNVIDCSKIIINPDISKALYFIDSITLGNGFVVADVDDDFVNLFMNGSIKELRENDADGFFNFVAKIKSLCNNFDWWYYSCVCGYPLELFRSRFSCFECARKIKNAVKKYKVLVDVKDATGSARFVLYDRFAALLMVFLRKNEFPTHKSNRQAYRVASSSNNSLRVRSIPQGLMDQAILVGSTSL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2031 355 CDD RPA1_DBD_B_like 92 185 - -
Amo05g2031 355 Gene3D - 215 319 IPR012340 -
Amo05g2031 355 Gene3D - 66 199 IPR012340 -
Amo05g2031 355 PANTHER REPLICATION FACTOR A 1, RFA1 54 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo05g2031 355 Gene3D - 2 64 IPR012340 -
Amo05g2031 355 SUPERFAMILY Nucleic acid-binding proteins 223 306 IPR012340 -
Amo05g2031 355 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 54 302 - -
Amo05g2031 355 SUPERFAMILY Nucleic acid-binding proteins 72 196 IPR012340 -
Amo05g2031 355 Pfam Domain of unknown function DUF223 5 75 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2031 Amo-Chr5 43988509 43990669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2031 5 291 Core DNA Replication Machinery Family AT5G08020 22.508 9.42e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2031 - - aip:107620782 355.14