Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1992 ATGTGTTATATAACAACTATGTTTAAGTATGTATGCCAATGCTTATTCTGGAATTCAGGTTCATATGATACAGAAAAGTTAGCAAAGTCCCTTCGCCGCAGTAGCCTGAATTTCAAGTACACTTCACTGGAAAGGGCTACTGGATCCTTTGATGAGACTAACAAGTTAGGACAAGGAGGYTTTGGAACAGTTTACAAAGTAGTTATCTTATCTGCATACCTATATCCCAACCATTTTAACATAAGAATGCAACTATATAACAATTTTCTATTGCAGGGAGTTCTACCTGATGGAAGAGAGATTGCTATCAAGAGGCTATATTTCAATAACAAACATAGAGCAGGAGATTTCTACAATGAAGTGAACATAATCAGTAGCGTGGAACACAAGAATCTAGTCCGACTGTTAGGATGCAGTTGTTCAGGACCCGAAAGCCTGCTTGTGTATGAATATCTGCCCAACAGAAGTCTCGATCGCTTCATTTTTGACAAGAATAAGGGAAGAGAACTGAACTGGGAGAAGAGATACGAAATCATCGTTGGGACAGCTGAAGGATTAGCATACCTACATGAGAATTCTAAAACCAAAATAATTCACAGAGATATAAAAGCCAGCAACATCCTCTTGGATGCAAAGCTTCGTGCTAAAATCGCAGATTTTGGCTTGGCTAGATCCTTTCAAGAAGATAAGAGCCATATAAGTACAGCTATTGCAGGAACTTTGGGTTATATGGCTCCAGAGTACATAGCTCATGGTCAGTTAACAGAAAAGGCAGATGTGTATAGTTTTGGAGTGCTACTGCTAGAGATAGTTACCGGGAGACAGAACAACAGGAGCAAAGCAGCTGAATATTCAGACAGCCTAATTACAGTGGCATGGAAACACTTTCAGTCAGGGACAGCTGAACAATTATTTGATCCAAATCTTCAGTTGCATGAKGACTACAACAACAGCAGTGTTAAGAATGAGATCTTAAGAGTGGTTCAAATAGGACTTCTATGCACCCAAGAGAACCATTTGTTGCGGCCAACTATGTCAAAAGTGCTGCAGATGCTAACAAAGAAGGAGGAGCAACTTGTTGCTCCTTCTAATCCACCTTTCCTAGATGAGAATACCATGGAATTCTGTGACATAAGTGGTGACCCATTTTTCCCTCTCGTTGCAGATGACTCAGTCGCTACCATGTCCCATAGCTCTTTTCATCCCAGGTGA 1212 0.4043 MCYITTMFKYVCQCLFWNSGSYDTEKLAKSLRRSSLNFKYTSLERATGSFDETNKLGQGGFGTVYKVVILSAYLYPNHFNIRMQLYNNFLLQGVLPDGREIAIKRLYFNNKHRAGDFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNRSLDRFIFDKNKGRELNWEKRYEIIVGTAEGLAYLHENSKTKIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYIAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKAAEYSDSLITVAWKHFQSGTAEQLFDPNLQLHXDYNNSSVKNEILRVVQIGLLCTQENHLLRPTMSKVLQMLTKKEEQLVAPSNPPFLDENTMEFCDISGDPFFPLVADDSVATMSHSSFHPR* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1992 403 SUPERFAMILY Protein kinase-like (PK-like) 34 375 IPR011009 -
Amo05g1992 403 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 382 - -
Amo05g1992 403 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 68 - -
Amo05g1992 403 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 92 382 - -
Amo05g1992 403 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 19 68 - -
Amo05g1992 403 ProSiteProfiles Protein kinase domain profile. 50 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1992 403 SMART serkin_6 50 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1992 403 Gene3D Transferase(Phosphotransferase) domain 1 152 364 - -
Amo05g1992 403 CDD STKc_IRAK 56 354 - -
Amo05g1992 403 Gene3D Phosphorylase Kinase; domain 1 17 151 - -
Amo05g1992 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Amo05g1992 403 Pfam Protein tyrosine and serine/threonine kinase 53 351 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1992 Amo-Chr5 43329161 43330803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1992 20 403 Receptor kinase-like Gene Family AT1G70520 68.571 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo05g1992 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1992 - - lja:Lj2g3v1415230.1 608.601