Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1989 AATGTTGTCACCATTTTAGCTCTTAGCATAGTTGCATACAAAATGAAGAGAACAGACTCTTTCATCTCCTCTCAATGCTTTGTTTACCTCATCATTGAAGCACTGTTACTATCAGAGAGTTCAATAGCAGAACCAAGGGCGAAAACGATCCAAATTACATGTGGCAATCAATTTGAGCACAACAACACCACCTTTGTTCCGAATTTCGTTACAGCCATGGACAATATCACTCAACAGATTAGCACTAACATCTTTGCAACAGCAGTTGCAGGCACAGGACCAGACACTAACTATGGCCTGTTTCAGTGCTATGGCGATCTTTCCTTACTCGATTGCGCATTGTGTAACGCTGAGGCACGCACGGTTCTTGCTGGATGCTTCCCTTATAACGGTGGTCGAATTTACCTTGATGGTTGCTTCATGAGGGTTCAGAACTATAGTTTCTTTAATCAGTATTCAGGAGCAGGAGACAAGGCTATATGTGGGAACACAACTAGGAAGAACTCGAGTTTTCAAGCAGCAGCAAAGCAAGCAATTTCAACAGCAGTTCAAGATGCACCAAACAACCTTGGCTATGCTAGAGTTAAGGTTTCTGTGTCAGGAACAATTAATGCGTCCGCTTATGTTCTGGCTGATTGTTGGAGGAATTTGGACCCAAGATCCTGCAAAGCATGTCTTGAGAACGCATCTTCTTCTATATTCGGATGCTTGCCTTGGTCGGAAGGGCGAGCACTTAACACCGGTTGCTTCATGAGGTACTCAGACACAGATTTTCTCAACAAGGAACAAGAAAATGGGAGTTCAAAAGTGAACGTAGCAGTGCTAGTTGTTCCAATAGTCAGTTCAGTGGTTGTTCTGGTGGTTGGAATTGTTATTGGGATTTATATCTGGAAACACAGATACATTCAAAACAAAAGAAGAGGTTCATATGATGTGAAAAAACTAGCAAAGTCCCTTCACTGCAGTGGCTTGAATTTCAAGTACTCTACACTGGAAAAGGCGACTGGATCCTTTGATGATGCTAACAAGTTAGGCCAAGGAGGATTCGGAACAGTTTATAAGGTAGTTCTCTCATTTGTGTACCTTATCCCAACGATTTTGACATATGAAAGGCACTCTTACAACTTGCTATTGCAGGGAGTTCTACCTGATGGAAGACAGATTGCCGTCAAGCGGTTATATTTCAACAACAGACATAGAGCTTTGGATTTCTACAATGAAGTTAACATAATTAGCCGAATCGAACACAAGAATCTAGTTAGACTGTTAGGCTGCAGCTGTTCAAGACCTGAAAGCTTGCTTGTATATGAATTTCTTCCCAACAGAAGTCTTGACTGCTTCATTTTTGACAGAAATAAGGGAAGGGAACTGAAATGGGAGAAGAGATATGAAATTATTGTTGGGACAGCTGAAGGACTAGTTTACCTGCATGAGAACTCTGAAATCAGGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGCTTCGTGCAAAAATTGCAGATTTTGGTTTGGCTAGATCCTTGCAAGAAGACAAGAGCCACATAAGTACAGCTATAGCAGGAACTTTGGGCTATATGGCTCCAGAGTACTTGGCTCATGGTCAGTTAACAGAAAAGGCCGATGTATATAGTTTTGGAGTGTTACTGTTAGAGACAGTTACCGGGAGACAGAACAACAGAGGCAAAACAACAGAATATTCAGACAACCTAGTTACAATTGTATGGAAGCATTTCCAGATGGGGACTGCAGCACAATTATTTGATCCAAATCTTCAGTTGCATAACCACAACAGCAGCAATACTAAGAATGAGGTTTTAAGAGTGGTTCATATAGGTCTTCTATGCATCCAAGAGAACCCTACACTGAGACCAACTATGTCAAAGGCACTACATATGTTAACAAAGAAGGAGGAGCACCTTGCTGCTCCCTATAATCCACCCTTCCTAGATGAGAGTACCATGGAACTGCACGACATGAGTAGCGACCCATCTTCCCCTCTCAATGTACCAACATCAATTGCTACCATGTCGCATAGCTCGTTTTATCCGAGGTGA 2070 0.4188 NVVTILALSIVAYKMKRTDSFISSQCFVYLIIEALLLSESSIAEPRAKTIQITCGNQFEHNNTTFVPNFVTAMDNITQQISTNIFATAVAGTGPDTNYGLFQCYGDLSLLDCALCNAEARTVLAGCFPYNGGRIYLDGCFMRVQNYSFFNQYSGAGDKAICGNTTRKNSSFQAAAKQAISTAVQDAPNNLGYARVKVSVSGTINASAYVLADCWRNLDPRSCKACLENASSSIFGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSKVNVAVLVVPIVSSVVVLVVGIVIGIYIWKHRYIQNKRRGSYDVKKLAKSLHCSGLNFKYSTLEKATGSFDDANKLGQGGFGTVYKVVLSFVYLIPTILTYERHSYNLLLQGVLPDGRQIAVKRLYFNNRHRALDFYNEVNIISRIEHKNLVRLLGCSCSRPESLLVYEFLPNRSLDCFIFDRNKGRELKWEKRYEIIVGTAEGLVYLHENSEIRIIHRDIKASNILLDAKLRAKIADFGLARSLQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLETVTGRQNNRGKTTEYSDNLVTIVWKHFQMGTAAQLFDPNLQLHNHNSSNTKNEVLRVVHIGLLCIQENPTLRPTMSKALHMLTKKEEHLAAPYNPPFLDESTMELHDMSSDPSSPLNVPTSIATMSHSSFYPR* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1989 689 Pfam Salt stress response/antifungal 161 255 IPR002902 -
Amo05g1989 689 Pfam Salt stress response/antifungal 57 146 IPR002902 -
Amo05g1989 689 SMART serkin_6 338 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1989 689 Gene3D - 46 148 IPR038408 -
Amo05g1989 689 Gene3D - 158 258 IPR038408 -
Amo05g1989 689 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 379 670 - -
Amo05g1989 689 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 24 358 - -
Amo05g1989 689 Pfam Protein tyrosine and serine/threonine kinase 342 636 IPR001245 GO:0004672|GO:0006468
Amo05g1989 689 Gene3D Phosphorylase Kinase; domain 1 300 438 - -
Amo05g1989 689 SUPERFAMILY Protein kinase-like (PK-like) 322 670 IPR011009 -
Amo05g1989 689 ProSiteProfiles Gnk2-homologous domain profile. 153 258 IPR002902 -
Amo05g1989 689 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 379 670 - -
Amo05g1989 689 CDD STKc_IRAK 344 640 - -
Amo05g1989 689 ProSiteProfiles Gnk2-homologous domain profile. 47 148 IPR002902 -
Amo05g1989 689 ProSiteProfiles Protein kinase domain profile. 338 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1989 689 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 24 358 - -
Amo05g1989 689 Gene3D Transferase(Phosphotransferase) domain 1 439 649 - -
Amo05g1989 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1989 Amo-Chr5 43294326 43297429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1989 26 689 Receptor kinase-like Gene Family AT1G70520 61.411 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo05g1989 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1989 - - lja:Lj2g3v1415230.1 1045.03