Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1987 ATGGAGGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATCTTCCCTGCCGACTACCACAGCTTCCTCATGTCCGCTTCCTCGTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCGACGAGCTTCTCTCTGCCGCTGGAATTCAACAGCAGCAACCACAGCACAACAACGAGGCCATGGCATCGACCATGATGAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTGCAGGCCTACATCGATTGCCAGAAGGTCGGCGCACCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCGCGAAAACGACCTTTTCAAGAGAGACGACGTCGTTTCCACGTGCTTCGGAGCCGATCCCGAGCTGGACGAGTTCATGGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCGATGAGGCAACGAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCAATCTCTGCTGCAACGGTGCTTCTGTTCCAACTCTTTCTGATGATGGAGCTGTGTCTTCAGAGGAAGATTTTAGTGCTGGAGATGGTGATGGAGGTCAAGATGGTCAATCAAGGGGTGAAGATCGTGAGCTTAAGGACAGGCTTCTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTGCCTAAGGAAGCAAGGCAAACACTCCTTCAATGGTGGAATGTTCACTACAAATGGCCTTATCCTACGGAAGCTGACAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATTTTCTATGATGGAAAATCTTGGTGGCCGATTCCTTCCTGATGAATGA 972 0.5 MEEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSASSSSSASAAAATIPMLGSDELLSAAGIQQQQPQHNNEAMASTMMKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDLFKRDDVVSTCFGADPELDEFMETYCELLVKYKSDLARPFDEATSFLNKIEMQLSNLCCNGASVPTLSDDGAVSSEEDFSAGDGDGGQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLGGRFLPDE* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1987 323 Gene3D - 239 312 - -
Amo05g1987 323 Pfam ELK domain 220 241 IPR005539 GO:0003677
Amo05g1987 323 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Amo05g1987 323 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Amo05g1987 323 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Amo05g1987 323 SUPERFAMILY Homeodomain-like 241 312 IPR009057 -
Amo05g1987 323 SMART HOX_1 242 307 IPR001356 GO:0003677
Amo05g1987 323 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Amo05g1987 323 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Amo05g1987 323 SMART ELK_2 220 241 IPR005539 GO:0003677
Amo05g1987 323 CDD homeodomain 252 304 IPR001356 GO:0003677
Amo05g1987 323 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
Amo05g1987 323 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Amo05g1987 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Amo05g1987 323 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Amo05g1987 323 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Amo05g1987 323 MobiDBLite consensus disorder prediction 192 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1987 Amo-Chr5 43241577 43251449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1987 1 323 Homeobox Transcription Factor Family AT1G23380 62.985 7.60e-148 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo05g1987 KNOX2 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1987 - - gmx:100794719 466.463