Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1978 ATGGTTACCAATGCTACTTCTACAAGTGTTTGCCCCCAACCCATGAAACCGACATCAAATGGTGTGTTTCAAGGAGATAACCCTCTTGATTTTGCACTCCCCATAGCTATTTTACAGATATGCCTAGTATTTGTAGTCACAAGAGGATTGGCATATATTATAAGGCCTTTGAGGCAGCCAAGAGTCATTGCAGAGATTGTGGGAGGAATATTACTTGGGCCATCAGCATTAGGACGAAATAAAAGCTATTTGAATGCTGTCTTCCCCTCCAAGAGTCTTACAGTACTGGATACTCTGGCAAACATTGGCCTTTTGTTCTTTCTATTCCTTGCAGGCCTAGAGTTAGATCCGAGATCTTTGCGTCAAACAGGGAAACAGACCCTTGCCATTGCTATTGCTGGAATAAGTATACCTTTTGCCTTGGGAATTGGTTCATCATTTGTTCTTAAAGAAACAATTGCCAAAGGTGTAAATGGTACTGCATTTCTTGTCTTTATGGGTGTTGCTCTATCCATAACTGCTTTCCCTGTGTTGGCTCGTATTTTGGCCGAGTTGAAACTTCTAACTACCAATGTTGGTAGAATGGCCATGTCTGCCGCAGCAGTAAATGATATTGCTGCTTGGATTCTGCTTGCACTTGCTGTTGCCTTGTCAGGCGATAGCGAGTCTCCACTAGTGTCATTGTGGGTCTTCTTATGTGGATGTGGTTTTGTTCTTTGTTCAATCATCATTGTCCCTCCAATTTTCAAAAGGATTACACAACGATGTAATGAAGGCGAGCCGGTGGATGAGATATATATATGTGCTACATTAGTTGTTGTTTTGGCCGCGGGTTTTGTTACAGATGCTATTGGAATCCATGCCATGTTTGGTGCATTTGTTGTTGGTGTGTTGATTCCAAAAGATGGACCATTTACCAGGACTCTTGTGGAAAAAGTAGAGGATCTTGTTTCGGGCATTTTCCTCCCACTCTATTTTGTGTCAAGTGGATTGAAGACCAACATATTCGCCATTCACGGCCTGCAGTCATGGGGTATTCTGGCCTTAGTTATTTTCACTGCTTGTTTTGGGAAGATTGTTGGAACCGTTGTTGTATCACTTTTCTGTAAAGTACCCTTGAAGGAGGCTTTAGCTCTGGGATTCCTAATGAACAGTAAGGGCTTGGTTGAATTGATTGTTCTCAACATTGGCAAAGATAGGAAGGTTTTAAATGATCAAACCTTTGCCATTATGGTTCTTATGGCAGTATTTACCACATTCATTACCACTCCTCTTGTCATGGCTGTGTATAAGCCTGCAAGAAGGGCGAAAATAGATGATTACAAATACAAAACAATAGCAAGGAAGAACACAAACAGCCAATTGAGGATTCTTTGCTGTTTCCATAATGCAAGAAATATTCCATCAATGATAAACTTGATTGAAGCCTCAAGAGGAATCCAGAAGTCCGGTGGAATTTGTGTGTATACAATGCACCTCAGAGAATTTTCTGAGAGGTCATCAACAATCTTAATGGTACATAAGGCAAGGAAAAATGGGTTGCCATTCTGGAATAAGGATCGTCCCTCTGATGCTGATCATTTAATTGTGGCATTTGAGGCATACCATCAACTGAGTCAAGTGTCTGTCAAACCAATGACCGAAATCTCATCTATGGCAGACATGCACATAGACATTTGTGCAACTGCTGGGGGAAAGAAAGCTGCAGTAATCATTCTTCCGTTTCATAAGCACCAAAGATTGGATGGCTCATTAGAGACAACAAGAAGTGATTTTAAATATGTTAACAGAAGGGTCCTTGAGAATGCTCCATGCTCAGTTGGAATTCTCGTTGATCGTGGCCTTGGTGGTACATCCCATATATCTGCAAGCAATGTTTCTTATTCCATTACAGTGCTTTTCTTTGGTGGAAGTGATGATCGCGAGGCCCTTGCTTATGGTGCTCGAATGGCCGAGCACCCTGGCATAAGATTGGTGGTTCTTCGCTTTGTCGTAGAACCAAGTACCACAGGAGATATCGTTAGAGTGGACGTGGGAGAATCCTCTTCCAGCTCCAAATTAGTCTCAGAGGATGAGGAGTTCCTTAATGAATTCAAGGCAAAAGTAGCTAACGATGATTCTGTGACATATGAAGAGAAAGCAGTAAAGGATGCAGCAGGAACAGTTGCTGTGATCTGTGAGTTCACTCATTGCAATCTGGTTCTTGTGGGTCGAAGTCCACAAGGTGAAGTGGCATATGCTCTCAAGAGAAATGAATACCCGGAACTTGGACCAATTGGTTCTTTGCTGGTATCTCAAGATTGCCCAACAATAGCATCCGTCTTGGTGATGCAGCAGTATCAGCATCAATAG 2352 0.4222 MVTNATSTSVCPQPMKPTSNGVFQGDNPLDFALPIAILQICLVFVVTRGLAYIIRPLRQPRVIAEIVGGILLGPSALGRNKSYLNAVFPSKSLTVLDTLANIGLLFFLFLAGLELDPRSLRQTGKQTLAIAIAGISIPFALGIGSSFVLKETIAKGVNGTAFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDIAAWILLALAVALSGDSESPLVSLWVFLCGCGFVLCSIIIVPPIFKRITQRCNEGEPVDEIYICATLVVVLAAGFVTDAIGIHAMFGAFVVGVLIPKDGPFTRTLVEKVEDLVSGIFLPLYFVSSGLKTNIFAIHGLQSWGILALVIFTACFGKIVGTVVVSLFCKVPLKEALALGFLMNSKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPARRAKIDDYKYKTIARKNTNSQLRILCCFHNARNIPSMINLIEASRGIQKSGGICVYTMHLREFSERSSTILMVHKARKNGLPFWNKDRPSDADHLIVAFEAYHQLSQVSVKPMTEISSMADMHIDICATAGGKKAAVIILPFHKHQRLDGSLETTRSDFKYVNRRVLENAPCSVGILVDRGLGGTSHISASNVSYSITVLFFGGSDDREALAYGARMAEHPGIRLVVLRFVVEPSTTGDIVRVDVGESSSSSKLVSEDEEFLNEFKAKVANDDSVTYEEKAVKDAAGTVAVICEFTHCNLVLVGRSPQGEVAYALKRNEYPELGPIGSLLVSQDCPTIASVLVMQQYQHQ* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1978 783 PANTHER CATION/H(+) ANTIPORTER 18 7 782 - -
Amo05g1978 783 Gene3D - 35 439 IPR038770 -
Amo05g1978 783 PANTHER CATION/H + ANTIPORTER 7 782 - -
Amo05g1978 783 Gene3D - 496 750 - -
Amo05g1978 783 Pfam Sodium/hydrogen exchanger family 42 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1978 Amo-Chr5 42871913 42875730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1978 1 781 Antiporter Super Family AT5G41610 69.797 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1978 - - gmx:100810155 1214.91