Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1977 ATGGTGGTGGTGATAGAGCAGCAAGAGAATGAGGATCGAAACGCAAATCCCTCCAATACTGCTGGTAACGATGCTTCCGACGGTTTTGAAACGGCCAGCGACACCGACCTGGGCAGCGAAACCGGAGGTGATGACGTTGGCGCTAGCAGCCATGATCAACAGCTCGAACAACAGCAACATCAACAACAGCAGCCGAAGCCAGAGCATTCGGAGCCGGAACCTGAACAGAGTGTTTCTCCAAGTAATAGTTTTTCTAGAGATCCCTTGATCATTGAGGAATTGGAGAAGAAAGCATTGGTTCAAGCAAATGAGGCAAAGGCAGAAGGGAATAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTCTACAAGTTGCACCTGACATGCCTTCATCTGTTGAAATACTCTCAATATGTCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCATTAGATCTGAATCCAGTGTATATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAATGATGAAGGAAGAGATGATTGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCGGTTTGGGATGAGTGTCGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAGCGTTAA 825 0.4376 MVVVIEQQENEDRNANPSNTAGNDASDGFETASDTDLGSETGGDDVGASSHDQQLEQQQHQQQQPKPEHSEPEPEQSVSPSNSFSRDPLIIEELEKKALVQANEAKAEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEILSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREMMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1977 274 MobiDBLite consensus disorder prediction 9 38 - -
Amo05g1977 274 SUPERFAMILY TPR-like 101 220 IPR011990 GO:0005515
Amo05g1977 274 MobiDBLite consensus disorder prediction 1 84 - -
Amo05g1977 274 Pfam Tetratricopeptide repeat 178 210 IPR013105 -
Amo05g1977 274 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Amo05g1977 274 SMART tpr_5 102 135 IPR019734 GO:0005515
Amo05g1977 274 SMART tpr_5 177 210 IPR019734 GO:0005515
Amo05g1977 274 SMART tpr_5 143 176 IPR019734 GO:0005515
Amo05g1977 274 Pfam Tetratricopeptide repeat 147 174 IPR019734 GO:0005515
Amo05g1977 274 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 274 - -
Amo05g1977 274 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 274 - -
Amo05g1977 274 MobiDBLite consensus disorder prediction 46 65 - -
Amo05g1977 274 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
Amo05g1977 274 Gene3D Tetratricopeptide repeat domain 48 241 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1977 Amo-Chr5 42866454 42870531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1977 102 244 Calmodulin-binding Proteins AT3G25230 36.424 1.83e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1977 K24926 - gmx:100808386 369.007