Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1960 ATGGTGAGTGTGCCATGCAGCAGCATGTCAATGGTGGTGACAGTGAGATGCGGACACTGCACAAGCCTTCTCTCTGTGAATATGATGAAAGCTTCTTTTGTCCCTTTACACCTCTTAGCTTCTCTTTCTACTCATCATCATCATCATTCAAAAGAAGAGGATGCAAACAACAACATCGCAATGAACAGTTCATCATCCATGATGATGATCAACTACTCCTCTGATGATTGTGCAGAAGAGGATGTAACCACAATCAACAATGTTGTCAACAAACCCCCGGAGAAAAGACAGCGAACTCCATCAGCTTATAACCGATTCATCAAAGAAGAAATTAAAAGGCTAAAGGCAGAAAACCCTGAAATGGCACACAAGGAGGCTTTCAGTACCGCTGCAAAAAATTGGGCCAATTTTCCACCAACTCAGTTCAATGGAGATGAAGAAATTTGCAATCAGAAAGAGCAGTTTGCGGATCTGGACTCCCAAGTGGACCGTCATTCTCATTCTCATGAGAGCATCAACGAAGAAGGTGAAAGTTTCCATGGAAGAAAGATGCAAAGAAATTCCATCATGGCAAGGACACAACTTGAATGA 591 0.4247 MVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSTHHHHHSKEEDANNNIAMNSSSSMMMINYSSDDCAEEDVTTINNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPTQFNGDEEICNQKEQFADLDSQVDRHSHSHESINEEGESFHGRKMQRNSIMARTQLE* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1960 196 MobiDBLite consensus disorder prediction 163 182 - -
Amo05g1960 196 PANTHER PROTEIN YABBY 6-RELATED 1 161 IPR006780 GO:0007275
Amo05g1960 196 SUPERFAMILY HMG-box 86 140 IPR036910 -
Amo05g1960 196 Pfam YABBY protein 1 143 IPR006780 GO:0007275
Amo05g1960 196 PANTHER AXIAL REGULATOR YABBY 4 1 161 - -
Amo05g1960 196 MobiDBLite consensus disorder prediction 163 196 - -
Amo05g1960 196 Gene3D High mobility group box domain 86 180 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1960 Amo-Chr5 42430401 42432777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1960 1 196 C2C2-YABBY Transcription Factor Family AT1G23420 50.485 5.02e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo05g1960 YABBY 3.6e-53 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1960 K25796 - gmx:100779415 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1960 05 42430401 42432777 Amo15g0157 15 5803226 5805860 hybridization