Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1951 ATGATGAATGCCACTGAACTAAATAATGTAACAGAAATTGGCAGTGCCATATTGTTACTACCTGTAATTACAAATAGCACTAAGGCATCAGATAAGGGTTCAATGGAGGGACAAGAATTAGGCATGTCTAACACAGCAACTCTTTGGGTTCAATCTGATTTCTTCTGTGCAACTGTTCTGACTATTGACATAACAAAACCTATTAGGGTTTTCAAAAAAAAAAAAAAAATTTTAGCTGAGAATTGGGGAGCAATTGCAGCTCATCATAGAAATTCAGCAAAAGAAGATACAGGATTTTCATTTGTTAATTGCAAAATCAAAGGAAATGGTAGAATCTTGCTTGGAAGAGCTTGGGGAGAATATTCAACAACAATTAAAAGTTTAAAACTATTCATATTCTGGTTTTACAAGACTGCAGTGTTTGGAGAGTATCAGTGTTATGGAAAAGGATCAAATAGAACTGGAAGGGTAGAATGGTCAAAAAATTTCAACAGTGAAGAAGCTATGCCTTTTCTTGGTAGAGACTATATAAATGGAGATCAATGGCTTAGACTACAATATATAGGGACCCAATTAAAAAAAATTGTGAATTTAGCAGCAGCAGCAGAAGAAGAAGAAGTGGGTGAGGAGAGTTTGGAATTGAGATCAAAGAAAGAGGTTAGAGTTATTGTGGTTGATCAACATGGTAAGGGACATTCAAAAACTGTTCAAGGTGCTGTGAATATGGAACTTATAGGTAAAAGAAATGAAACATCAAGTGCTGTGATTACTTGGAACAGCAAATCATCTGATCAAGGCCCTAATGGCCAAACATTGGGAACCTATGGTTCAGCAACTGTTGGAATTGACTCTGATTATTTCTGTGCCTCTCAGGTCACTTTTGAGAATTCAGTGGTTGCAATGCCTGGTGGAAATGGAATGCAAGCAGTGGCACTAAGGGTAAACAGTAATAGAGCCATGTTCTATAAAGTTAAGATCAAAGGAACACAGGACACTCTCTTAGACAACACAGGAACACATTACTTCTATAAATGTTACATCCAAGGAAAGATTGATTTCATCTTTGGCAGTGCTAAATCACTCTATGAGAAATGTAGGCTTGAGTCAATAGCTGAGAGCTTTGGAGCAATTGCAGCACATCATAGGGATTCAGAAAAGCAAGACACAGGATTTTCATTTGTAGGATGCAAGATTAGAGGGAGTGGGAGTGTGTACCTTGGAAGAGCATGGGGTAACTACTCAAGAATTATATACTCCAATTGTTACATGGATGATATCATCAATCCTCAAGGCTGGTCAGAATGGAACCATCCAGAAAGAAAAAGGACTGCAGTGTTTGGTGAATATAAGAACATGGGAAGAGGAGCAGATAGAAGACAGAGAGTGGCATGGTCAAAATCATTCAACTATCAGGAAGCAAGGCCTTTCCTTGGCAAGAGCTTCATCAATGGAGATCAATGGCTCAGACTCTAG 1473 0.3809 MMNATELNNVTEIGSAILLLPVITNSTKASDKGSMEGQELGMSNTATLWVQSDFFCATVLTIDITKPIRVFKKKKKILAENWGAIAAHHRNSAKEDTGFSFVNCKIKGNGRILLGRAWGEYSTTIKSLKLFIFWFYKTAVFGEYQCYGKGSNRTGRVEWSKNFNSEEAMPFLGRDYINGDQWLRLQYIGTQLKKIVNLAAAAEEEEVGEESLELRSKKEVRVIVVDQHGKGHSKTVQGAVNMELIGKRNETSSAVITWNSKSSDQGPNGQTLGTYGSATVGIDSDYFCASQVTFENSVVAMPGGNGMQAVALRVNSNRAMFYKVKIKGTQDTLLDNTGTHYFYKCYIQGKIDFIFGSAKSLYEKCRLESIAESFGAIAAHHRDSEKQDTGFSFVGCKIRGSGSVYLGRAWGNYSRIIYSNCYMDDIINPQGWSEWNHPERKRTAVFGEYKNMGRGADRRQRVAWSKSFNYQEARPFLGKSFINGDQWLRL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1951 490 Gene3D - 68 192 IPR012334 -
Amo05g1951 490 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 65 - -
Amo05g1951 490 SUPERFAMILY Pectin lyase-like 222 488 IPR011050 -
Amo05g1951 490 Pfam Pectinesterase 241 485 IPR000070 GO:0030599|GO:0042545
Amo05g1951 490 Pfam Pectinesterase 78 180 IPR000070 GO:0030599|GO:0042545
Amo05g1951 490 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 77 185 - -
Amo05g1951 490 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 243 490 - -
Amo05g1951 490 PANTHER PECTINESTERASE QRT1 77 185 - -
Amo05g1951 490 PANTHER PECTINESTERASE QRT1 243 490 - -
Amo05g1951 490 SUPERFAMILY Pectin lyase-like 39 189 IPR011050 -
Amo05g1951 490 Gene3D - 241 490 IPR012334 -
Amo05g1951 490 PANTHER PECTINESTERASE QRT1 20 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1951 Amo-Chr5 42216489 42224074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1951 221 442 Carbohydrate Esterase AT5G55590 53.755 8.10e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1951 K01051 - gmx:100804220 429.869