Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1934 ATGTTGGTTTTGCAGTGGCTGCAATTTCCATCATTGAAGAAGAAAGATCGAGGCGATGCCGGTTGGCCACAAGGTGGAAATGTACACTACTACTACAAACCAGGCGGGGCCAATGGTCCACAAGTAGGGAAGTACGGTTCACAAAAAAAACAGTCTACTCCGGTGAGAGGCAACTATGGAGGTTACGTGAGATCACCTTCAGAGCTACAACAAATGAGTGGGGGTATAATGGCTTATAGCTACGAAGAAATCGTGGAAGTAACGAACGGGTTTTCGAGTGAGAACGTAATAGGAGAAGGTGGGTTCGGGAGTGTGTACAAGGCTTTAATGCCCGATGGTAGAGTAGGAGCAGTGAAGATGCTGAAACCTGGTAGTGGCCAAGGAGAAAGAGAGTTTAGGGCTGAGGTTGACATTATTAGTAGGATTCATCATCGTCATTTGGTTTCTTTGATTGGTTATTGCATAGCTGAGCAACATAGAGTTCTTGTCTATGAGTTTGTTCCTAATGGGAATCTCAGTCAGCACTTGCATGGAAATAACTTACCTGTTTTGGATTGGCCGAATAGGATGAAGATAGCAAATGGCGCTGCAAGGGGCATAGCGTATCTGCATGAGGGCTGCAACCCAAGGATTATTCATAGGGATATTAAGTCCGCAAACATACTTTTGGATGGTGCTTATGAAGCACAGGTTGCAGACTTTGGACTTGCCAAACTAACTGATGACGCTAACACCCATGTATCAACCAGGGTGATGGGGACCTTCGGATACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGAGTTGTCCTGCTTGAGCTCATAACTGGAAGGAAGCCCGTTGATCCAAAGCGGCCCATCGGAGAAGAGAGTTTGGTTGAGTGGGCTCGTCCACATCTTCTTCTTGCAATGGGGACGCGTGCGTTTGGTGATCTAGAAGACCCAAGGCTTGAAGGACGCTATGTTCATTCTGAAATGTTAACCATGATTGAGGCTGCTGCCGCATGTGTTCGCCACTCTGCTCCTAAACGCCCCCGTATGGTTCAGGTGGCAAGAGCCTTAGAGTGTGGAGAACAACTAGATCTATCAAATGGGGTGAAATATGGTCAAAGCAGAATATATGATTCAAGCCAGTACATTAATGATATTATGAGATTTAGAAGGATGATGGCTGATGGCAATTTTAGCGGTTACGACTATGATATGTATAGTACAGAACACAGTTCAAGAGAGTTGTCTCCTTCTTTAGGGATGCCAACTAGTTCAGGTGGTAATTCAGAACCTAGATCTTTCAACAACCATAGGAGCTTCTCTGACTCTGAGAAACCATAA 1362 0.4501 MLVLQWLQFPSLKKKDRGDAGWPQGGNVHYYYKPGGANGPQVGKYGSQKKQSTPVRGNYGGYVRSPSELQQMSGGIMAYSYEEIVEVTNGFSSENVIGEGGFGSVYKALMPDGRVGAVKMLKPGSGQGEREFRAEVDIISRIHHRHLVSLIGYCIAEQHRVLVYEFVPNGNLSQHLHGNNLPVLDWPNRMKIANGAARGIAYLHEGCNPRIIHRDIKSANILLDGAYEAQVADFGLAKLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPKRPIGEESLVEWARPHLLLAMGTRAFGDLEDPRLEGRYVHSEMLTMIEAAAACVRHSAPKRPRMVQVARALECGEQLDLSNGVKYGQSRIYDSSQYINDIMRFRRMMADGNFSGYDYDMYSTEHSSRELSPSLGMPTSSGGNSEPRSFNNHRSFSDSEKP* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1934 453 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 62 431 - -
Amo05g1934 453 CDD STKc_IRAK 97 365 - -
Amo05g1934 453 ProSiteProfiles Protein kinase domain profile. 91 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1934 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Amo05g1934 453 Gene3D Phosphorylase Kinase; domain 1 62 166 - -
Amo05g1934 453 Pfam Protein tyrosine and serine/threonine kinase 94 292 IPR001245 GO:0004672|GO:0006468
Amo05g1934 453 SUPERFAMILY Protein kinase-like (PK-like) 67 364 IPR011009 -
Amo05g1934 453 SMART serkin_6 91 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1934 453 MobiDBLite consensus disorder prediction 419 443 - -
Amo05g1934 453 MobiDBLite consensus disorder prediction 419 453 - -
Amo05g1934 453 PANTHER RECEPTOR-LIKE KINASE 62 431 - -
Amo05g1934 453 Gene3D Transferase(Phosphotransferase) domain 1 167 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1934 Amo-Chr5 41977222 41981083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1934 31 421 Trihelix Transcription Factor Family AT1G70460 62.060 2.78e-164 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo05g1934 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1934 - - lja:Lj2g3v1414850.1 601.668