Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1877 ATGGTGGTGGTGATAGAGCAGCAAGAGAATGAGGATCGAAACGCAAATCCCTCCAATACTGCTGGTAACGATGCTTCCGACGGTTTTGAAACGGCCAGCGACACCGACCTGGGCAGCGAAACCGGAGGTGATGACGTTGGCGCTAGCAGCCATGATCAACAGCTCGAACAACAGCAACATCAACAACAGCAGCCGAAGCCAGAGCATTCGGAGCCGGAACCTGAACAGAGTGTTTCTCCAAGTAATAGTTTTTCTAGAGATCCCTTGATCATTGAGGAATTGGAGAAGAAAGCATTGGTTCAAGCAAATGAGGCAAAGGCAGAAGGGAATAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTCTACAAGTTGCACCTGACATGCCTTCATCTGTTGAAATACTCTCAATATGTCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCATTAGATCTGAATCCAGTGTATATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAATGATGAAGGAAGAGATGATTGGCAAGTTTCTGTTTTCATCTTTATCTTGGATTTCAATTATAGTTGCTATTGTATCATGCAGTGCTGCTAGCTGCACTTGTATGTTAAGCCTATTATCTTCCTGGTTGTCATTCATGTTAAACCTATTATCTGCTTCTTTACCTCTTGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCGGTTTGGGATGAGTGTCGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAGCGTTAA 972 0.4249 MVVVIEQQENEDRNANPSNTAGNDASDGFETASDTDLGSETGGDDVGASSHDQQLEQQQHQQQQPKPEHSEPEPEQSVSPSNSFSRDPLIIEELEKKALVQANEAKAEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEILSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREMMKEEMIGKFLFSSLSWISIIVAIVSCSAASCTCMLSLLSSWLSFMLNLLSASLPLAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1877 323 Pfam Tetratricopeptide repeat 147 174 IPR019734 GO:0005515
Amo05g1877 323 MobiDBLite consensus disorder prediction 9 38 - -
Amo05g1877 323 MobiDBLite consensus disorder prediction 1 84 - -
Amo05g1877 323 Pfam Tetratricopeptide repeat 178 210 IPR013105 -
Amo05g1877 323 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Amo05g1877 323 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 239 - -
Amo05g1877 323 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 285 323 - -
Amo05g1877 323 SMART tpr_5 102 135 IPR019734 GO:0005515
Amo05g1877 323 SMART tpr_5 177 210 IPR019734 GO:0005515
Amo05g1877 323 SMART tpr_5 143 176 IPR019734 GO:0005515
Amo05g1877 323 SUPERFAMILY TPR-like 101 220 IPR011990 GO:0005515
Amo05g1877 323 MobiDBLite consensus disorder prediction 46 65 - -
Amo05g1877 323 Gene3D Tetratricopeptide repeat domain 50 236 IPR011990 GO:0005515
Amo05g1877 323 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1877 Amo-Chr5 39827893 39831352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1877 102 233 Calmodulin-binding Proteins AT3G25230 37.143 3.40e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1877 K24926 - gmx:100808386 345.895