Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1868 TTCTCAAGTGAAGATGATGATAGCAGCCAAGGCGATGGAACGGGACGCGGAAGCAGTGGCTTTGAGCTCGTCTCCGCCTGCGGAGTCCGCCGTTCCAGGGGCCGTCCGCGAGGCTCGAAGAACAAGCCAAAACCGCCAGTGGTAATCACAAGAGAGAGCTCCAACACGCATAACGCTCACATCCTCGAAGTCGCGAGTGGCTCCGACGTCTTCGACAGCGTTGCCACCTACGCGCGGCTCCGCCAGCGCGGTATCTGCATCTTGAGCGGCAATGGAACCGTCACCATCGGTGACCCCGCAGCGCCCGGCTCTGTTGTCACGCTCCATGGAAGGTTCGAGATACTGTCTCTCTCTGGCTCGTTCCTGCCGCCGCCTGCTCCTCCCGGCGCGACGAGCCTCAGTATATACCTCGCCGGCGGGAAGGGACAGGTCATCGGAGGAAAAGTAGTCGGAAAGCTGATTGCGGCGGGGCCGGTGATGTCGCCGCCTCCGCCGGCGGTTTCTCAGGGCTCCGCAGGCGGTTGCGGCGTGGGAAACGGCGCTTTTCTGGATCCTTCTTCTGGTTTGCCGTTCTTCAATTTTCCGCTTGGTATGCATCAGAATGTTCAGTTGCCTGTGGACGGTTACTTTTCAGGTCAACGCGCCATCCTTTAA 654 0.6009 FSSEDDDSSQGDGTGRGSSGFELVSACGVRRSRGRPRGSKNKPKPPVVITRESSNTHNAHILEVASGSDVFDSVATYARLRQRGICILSGNGTVTIGDPAAPGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLAGGKGQVIGGKVVGKLIAAGPVMSPPPPAVSQGSAGGCGVGNGAFLDPSSGLPFFNFPLGMHQNVQLPVDGYFSGQRAIL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1868 217 Gene3D - 58 160 - -
Amo05g1868 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 170 212 IPR014476 GO:0003680
Amo05g1868 217 ProSiteProfiles PPC domain profile profile. 52 195 IPR005175 -
Amo05g1868 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 160 - -
Amo05g1868 217 SUPERFAMILY AF0104/ALDC/Ptd012-like 55 159 - -
Amo05g1868 217 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 160 IPR005175 -
Amo05g1868 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 170 212 - -
Amo05g1868 217 MobiDBLite consensus disorder prediction 1 16 - -
Amo05g1868 217 CDD DUF296 58 155 IPR005175 -
Amo05g1868 217 MobiDBLite consensus disorder prediction 1 54 - -
Amo05g1868 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 160 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1868 Amo-Chr5 39520138 39520872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1868 29 200 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 59.686 1.33e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1868 - - oeu:111391598 239.195