Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1851 ATGTCTTCTCTGATAGATGAGTTGAAGGAGCAGCTTTTGGAGGTGGAGAATGGCGAAGGACACCCGAAAATGGAGGTACGCGATATTCGGAGAGTGTCGGATGCAGGGGTCCCAATACTGAAGGGCATCAGTCTGGAAATCCCAAAGGGCGTCATAGTGGGAGTCATAGGCCCCAGTGGCAGCGGAAAGTCAACGCTCCTCAGGGCACTCAACCGCCTCTGGGAGCCTCCCTCCGCGTCCGTCTTCCTCGACTCCCGGGACATCTGCCAGCTCGACGTGCTCTCCCTCCGCCGCAAAGTCGGCATGCTGTTCCAGCTGCCCGCCCTCTTCGAGGGCACTGTAGCCGACAACGTGAGGTACGGCCCCAACCTCAGCGGGAAGAAGCTTTCAGATGTTGAGGTATGTAAGCTGTTGATGCTGGCGGACCTGGACACTTCCTTCCTTCAGAAGTCGGCGGCGGAGTTGTCAGTGGGTCAAGCACAGAGGGTTGCGCTGGCCAGAACTCTTGCTAATTCCCCTGAGGTTTTGCTGCTTGATGAGCCAACGAGTGCTTTAGATCCTATTTCCACGGAGAATATAGAGGCTGCACTGTTGAAGCTCAACAAGAATAATGGCATGACCATGATTATGGTGTCTCACAGCATCAAACAAATCCAGAGAATTGCTGACGTCGTCTGCCTCCTCGTTGATGGTGAGATTGTTGAGATTCTCAACCCTAACCAACTCTCCCAAGCCAACCATCCCATGGCTCAGAGGTTTCTTCAACTCACCACTTAA 777 0.5393 MSSLIDELKEQLLEVENGEGHPKMEVRDIRRVSDAGVPILKGISLEIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDSRDICQLDVLSLRRKVGMLFQLPALFEGTVADNVRYGPNLSGKKLSDVEVCKLLMLADLDTSFLQKSAAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEAALLKLNKNNGMTMIMVSHSIKQIQRIADVVCLLVDGEIVEILNPNQLSQANHPMAQRFLQLTT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1851 258 CDD ABC_PstB_phosphate_transporter 24 242 IPR005670 GO:0005315|GO:0016020|GO:0035435
Amo05g1851 258 Gene3D - 23 257 IPR027417 -
Amo05g1851 258 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524
Amo05g1851 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 245 IPR027417 -
Amo05g1851 258 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 17 257 - -
Amo05g1851 258 SMART AAA_5 49 232 IPR003593 -
Amo05g1851 258 Pfam ABC transporter 40 183 IPR003439 GO:0005524
Amo05g1851 258 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 17 257 IPR005670 GO:0005315|GO:0016020|GO:0035435
Amo05g1851 258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 255 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1851 Amo-Chr5 38641354 38642938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1851 20 256 Calmodulin-binding Proteins AT2G36910 30.522 3.85e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1851 K02068 - gmx:100791365 387.882