Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1837 ATGGGGAATAAGATAATAGCGCCATTTGTGGGAATGGTAATGGCTATGGTGTTGCAAAGTGGTAGCATGGTTGTTATCAAAGCAGCCATGAATGATGACTTCAACAAATATGTCTTGATTGTCTATTCTTTGGCACTCTCCACCCTACTTCTTCTCCCCTTTCTCTTCCTTCTACCCAGGTCAGAGCGTCCTACTCTGAGTTTCTCAACACTTTGCAACCTATTTTTGCTTTCTCTGTGTGGAAGTTCAGGACAAATATTTGCATATGTGGGCATAGATCTCAGCTCACCAACTCTTGCCTCTGCCATGCTCAACCTCATTCCAGCTTTAACTTTTGTACTTGCACTTTTATTCAGGATGGAAAAAGTTGAATGGGGACATTTCAGCATCCAAGCTAAAGTCTTGGGAACAGTGGTATCAATTGGTGGAGCATTTGTTGTGATATTATATAAGGGCCCACCAATCTTCAAGGCACCCATCTCCTCACTCTCTTCAATCCCATTATCATTTTCACCTCATTTTAACTGGATCTTGGGAGGCTTTTTCTGTGTTGCTGATTCTTTCGTAGCTTCAATCTGGTATATATATCAGGCGTCAGTAATAAGGAATTACCCTGCTGTAATGGTGACAGTGTTCTTCCAACTCTTATTTTCAACCATTCAGTGCTCAATATTTGCATTAATTGCAGTTAGAGATCAAAGTGCATGGCAGCTGAAGCTAGACACAGGGTTGATTGCAATCTTTTACCAGGCAATAGCTGCAACAACATTACGGTACCTGTTATGCACTTGGAGCGTCCAAAAAGCTGGACCATTTTTTTGCTCTATGTTCAAACCTATTTTAATCATCTTCACTGTTATCATGGGTGCTCTGTTCCTTGGAGATGACTTTTACCTTGGAAGCTTGATTGGTGCAGTTATAATCGTGGTAGGTTTTTATGGTGTAATGTGGGGAAAGGCCAAAGAAGAGAAATGCATGATAATTGATGAAGAGAGGTTGCAATCAACGTGCCAAAATGCTCCTCTCTTACATGACAAACACCTTACAGTATAA 1053 0.4093 MGNKIIAPFVGMVMAMVLQSGSMVVIKAAMNDDFNKYVLIVYSLALSTLLLLPFLFLLPRSERPTLSFSTLCNLFLLSLCGSSGQIFAYVGIDLSSPTLASAMLNLIPALTFVLALLFRMEKVEWGHFSIQAKVLGTVVSIGGAFVVILYKGPPIFKAPISSLSSIPLSFSPHFNWILGGFFCVADSFVASIWYIYQASVIRNYPAVMVTVFFQLLFSTIQCSIFALIAVRDQSAWQLKLDTGLIAIFYQAIAATTLRYLLCTWSVQKAGPFFCSMFKPILIIFTVIMGALFLGDDFYLGSLIGAVIIVVGFYGVMWGKAKEEKCMIIDEERLQSTCQNAPLLHDKHLTV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1837 350 Pfam EamA-like transporter family 12 148 IPR000620 GO:0016020|GO:0016021
Amo05g1837 350 Pfam EamA-like transporter family 179 316 IPR000620 GO:0016020|GO:0016021
Amo05g1837 350 PANTHER WAT1-RELATED PROTEIN 7 339 - -
Amo05g1837 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
Amo05g1837 350 PANTHER WAT1-RELATED PROTEIN 7 339 IPR030184 GO:0016021|GO:0022857
Amo05g1837 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1837 Amo-Chr5 38318032 38325725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1837 3 343 Nodulin-like Gene Family AT5G40240 38.682 5.54e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1837 - - gmx:100816194 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1837 05 38318032 38325725 Amo15g0115 15 4471360 4482470 hybridization