LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g1785	ATGCCGGGGCATCGGTCCAAGTCGTCGGAGAAGCACGCCGACGGCGGCGGCGCCAAGCCACTCCGGCGGGACCCATACGAGGTCCTCGGCGTCTCCCGCAACTCCACCGATCAGGAAATCAAAACCGCTTACCGCAAAATGGCTCTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAGGCAGCTGATATGTTCAAAGAGGTTACCTTTTCATACAATATATTGTCAGATCCTGACAAGCGTCGTCAGTTCGACACAGCTGGTTTTGAGGCTGTTGAATCGGATAACCAAGAGTTGGAGTTGGACCTTTCAAGTTTGGGTGCTGTGAATACAATGTTTGCTGCACTTTTTAGTAAACTCGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCCCTCAATGGTGTAGTGACCATTCGTCCACTTCCATTGGGACAGTTTATTTCTAGAAGGGTTGAGAAGCAATGTGCACATTTCTATTCAGTTACAATAACAGAAGAGGAAGCACAAGCTGGATTTGTTTGTCGAGTGCACTCATCAGACAAAAGCAAGTTCAAGTTGCTATATTTTGATCAAGAAGAAAATGGTGGATTAAGTCTTGCTCTCCAGGAAGACTGCGCAAAAACAGGGAAAGTTACCTCTGCTGGAATGTTTTTTCTTGGGTTTCCTGTTTATCGATTGGATCAGACCATGAACTCAATATCTGCTGCAAAGGATCCAGATACATCATTTTTCAGAAAGCTTGAAGGGTTTCAACCCTGTGAATTGACAGAACTGAAGGCTGGTACCCATGTGTTTGCAGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGCTCTATGCGCTGCACCATTTAGTGAAGAAAAGGAAAATTTAAGAAACATTGAAGCTCAAATTTTGTCTAAAAGGGCAGAGATATCAAAGTTTGAGACAGAGTACCGAGAGGTTCTGGCGCAGTTCACAGAGATGACAAGTAGATATGCAAATGAAATGCAAGAAATTGATGAACTATTAAAACAACGAAATGAAATACATGCAGCGTACACTGTTGCTCCTTTGAAACGGAGTTCAAGTAAGAGTCGGAATAAAAGTTCTTCCAATGAGGCGASAGAAGAGGGCCAGACAAAAGAGAAGAGGAATACAAGAGAACGACCAAAGAAGAAGAGATGGTACAACATCCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAG	1239	0.4286	MPGHRSKSSEKHADGGGAKPLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQFDTAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTIRPLPLGQFISRRVEKQCAHFYSVTITEEEAQAGFVCRVHSSDKSKFKLLYFDQEENGGLSLALQEDCAKTGKVTSAGMFFLGFPVYRLDQTMNSISAAKDPDTSFFRKLEGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFETEYREVLAQFTEMTSRYANEMQEIDELLKQRNEIHAAYTVAPLKRSSSKSRNKSSSNEAXEEGQTKEKRNTRERPKKKRWYNIHLRVDKRKAC*	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g1785	412	Coils	Coil	294	321	-	-
	Amo05g1785	412	PANTHER	DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)	1	411	-	-
	Amo05g1785	412	SUPERFAMILY	Chaperone J-domain	23	93	IPR036869	-
	Amo05g1785	412	PANTHER	DNAJ DOMAIN-CONTAINING PROTEIN-RELATED	1	411	-	-
	Amo05g1785	412	Coils	Coil	329	356	-	-
	Amo05g1785	412	Pfam	DnaJ domain	24	86	IPR001623	-
	Amo05g1785	412	ProSitePatterns	Nt-dnaJ domain signature.	66	85	IPR018253	-
	Amo05g1785	412	MobiDBLite	consensus disorder prediction	362	378	-	-
	Amo05g1785	412	SMART	dnaj_3	23	81	IPR001623	-
	Amo05g1785	412	PRINTS	DnaJ domain signature	81	100	IPR001623	-
	Amo05g1785	412	PRINTS	DnaJ domain signature	61	81	IPR001623	-
	Amo05g1785	412	PRINTS	DnaJ domain signature	26	44	IPR001623	-
	Amo05g1785	412	PRINTS	DnaJ domain signature	44	59	IPR001623	-
	Amo05g1785	412	CDD	DnaJ	24	78	IPR001623	-
	Amo05g1785	412	ProSiteProfiles	dnaJ domain profile.	24	89	IPR001623	-
	Amo05g1785	412	MobiDBLite	consensus disorder prediction	1	21	-	-
	Amo05g1785	412	MobiDBLite	consensus disorder prediction	1	32	-	-
	Amo05g1785	412	Gene3D	DnaJ domain	12	107	IPR036869	-
	Amo05g1785	412	MobiDBLite	consensus disorder prediction	358	400	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g1785	Amo-Chr5	36579399	36584662	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g1785	22	87	C2H2 Transcription Factor Family	AT1G74250	39.437	2.54e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g1785	-		-	gmx:100800929	729.169