Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1776 ATGAGACTCTTTTGGCAGATTTGGGATACAACAGGACAAGAAAGGTTCAATAGTTTAGGTGCTGCATTTTATAGAGGTGCAGATTGTTGTGTTTTGGTGTATGATGTAAATGCACACAACACATTTGACACACTAAACAATTGGCATGATGAGTTCATTAAGCAGGCAGATTTGAATGATCATRAAGCATTTCCCTTTRTGTTACTTGGGAACAAGGTTGATGTAGATGGTGGGAACAGTAGAAAGGTATTAAAAAGAGTTTGGGCCTTTGAGATTAATATGCATAGTTTTGAAGTTGAAATCTCATTCAACTTGTTGCARGTGACTGAGAAGAAAGCTAGGGAATGGTGTGCTTCTAGAGGGAACCTACCATACTTTTGTTTAATTGATACCTGTGGTGGATTTGGTCAAGTATATGTTGGTCGACATCTTTCTGGTGGAAATTTGAATGAGAGAACTGGACCACCATAYCATAGAAGTAGTAAAGGATGTAATTATGGACCACCATACGAGTGGCAAAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGCTTTTTGAAACGTTTCAAGCTTATGRAATTTTATATGATGTTGTCCGTAAAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTRTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATAYAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTRGATTTCTTGGAACAGAGAGACAGGTAAAGTCTTATTTTCCTTTCCTCATACTAATTATTACTTATGCTCTACTGATTTGGGACGAAAAGAATTTGAAGAGGCTTAAAAGCAGTGGAAAGTTAAAGAAAGTTCTTTGGAGACTAGGAATTTTGGTGGGTTACTTTTTCAAGCTCATGCCAATGCTATCAGAAATGTTATGA 1011 0.3719 MRLFWQIWDTTGQERFNSLGAAFYRGADCCVLVYDVNAHNTFDTLNNWHDEFIKQADLNDHXAFPFXLLGNKVDVDGGNSRKVLKRVWAFEINMHSFEVEISFNLLQVTEKKAREWCASRGNLPYFCLIDTCGGFGQVYVGRHLSGGNLNERTGPPYHRSSKGCNYGPPYEWQNSWWQSWCASSTLQGQLFETFQAYXILYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAXKQLKAQHHLILSGTPIXNNIMDLWSLFDFLMPXFLGTERQVKSYFPFLILIITYALLIWDEKNLKRLKSSGKLKKVLWRLGILVGYFFKLMPMLSEML* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1776 336 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 5 85 - -
Amo05g1776 336 ProSiteProfiles small GTPase Rab1 family profile. 1 181 - -
Amo05g1776 336 Pfam Ras of Complex, Roc, domain of DAPkinase 6 74 - -
Amo05g1776 336 Pfam SNF2-related domain 113 283 IPR000330 GO:0005524|GO:0140658
Amo05g1776 336 Gene3D - 2 129 IPR027417 -
Amo05g1776 336 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 104 127 - -
Amo05g1776 336 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 271 IPR014001 -
Amo05g1776 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 293 IPR027417 -
Amo05g1776 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 126 IPR027417 -
Amo05g1776 336 SMART rab_sub_5 6 112 - -
Amo05g1776 336 Gene3D - 159 317 IPR038718 -
Amo05g1776 336 PANTHER RAB FAMILY 104 127 - -
Amo05g1776 336 PANTHER RAB FAMILY 5 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1776 Amo-Chr5 35874823 35876656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1776 216 268 RAD5 or RAD16-like Gene Family AT5G22750 50.943 1.36e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo05g1776 SNF2_N 1.1e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1776 K07897 - adu:107469552 248.054