Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1749 ATGACTCAAGTGATGGAGAGAGACGGCGTCGTTTCAGAAGAAGTTCATGTCTTAGCCGTCGATGATAGCCTCGTCGATCGGAAGGTCATTGAGCGCTTACTCAAAATCTCAGCTTGTAAAGTTACTGCTGTTGATAGTGGAATCAGTGCCCTGCAGTTACTGGGGCTAGACGAACAGAGAACATCTGAATCAGATGATTTTGTGGGTTTAAAGGTAGATCTAATTATCACAGACTATTGCATGCCTGGAATGTCTGGTTATGATTTGCTCAAAAAAATCAAGGGATCGTCCACTTTCAGAGAAATTCCGGTCGTCATCATGTCCTCGGAAAATATCTTGCCACGAATTGACAGATGCTTAGAGGAGGGAGCAAAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTGAAACGGTTGAAGAATTATATGAGCACCGCCACCAGGGACGTTAGCGCCGCCGAAGCCGGAGGTTGCAGCGGTGGCGGCGGTGGTGGAGGAGGAGGAATTAACAAAAGGAAGCTTTCAGACACTACCGCCTTTGATTATCTGTCATCATCTCCACCGTCCATTTCGTCCTCAATAACCCCCTTATCATCGCCGTCCGATTCTTCTTCATCGCCTTCGCCGTCGCCATTATCTTCGCCCATCAGATCGCTTGATTCTCCAATCCGACGGCTTAAAATGACCGGCGCAGATTGA 702 0.4758 MTQVMERDGVVSEEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGISALQLLGLDEQRTSESDDFVGLKVDLIITDYCMPGMSGYDLLKKIKGSSTFREIPVVIMSSENILPRIDRCLEEGAKDFIVKPVKLSDVKRLKNYMSTATRDVSAAEAGGCSGGGGGGGGGINKRKLSDTTAFDYLSSSPPSISSSITPLSSPSDSSSSPSPSPLSSPIRSLDSPIRRLKMTGAD* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1749 233 CDD REC_typeA_ARR 17 140 - -
Amo05g1749 233 MobiDBLite consensus disorder prediction 185 233 - -
Amo05g1749 233 Gene3D - 15 160 - -
Amo05g1749 233 SUPERFAMILY CheY-like 15 139 IPR011006 -
Amo05g1749 233 MobiDBLite consensus disorder prediction 185 218 - -
Amo05g1749 233 Pfam Response regulator receiver domain 17 137 IPR001789 GO:0000160
Amo05g1749 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 232 IPR045279 GO:0009736
Amo05g1749 233 SMART REC_2 15 144 IPR001789 GO:0000160
Amo05g1749 233 ProSiteProfiles Response regulatory domain profile. 16 145 IPR001789 GO:0000160
Amo05g1749 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 9 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1749 Amo-Chr5 35217313 35219098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1749 13 229 Response Regulator Gene Family AT1G10470 53.527 3.25e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo05g1749 Response_reg 5.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1749 K14492 - gmx:100787696 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1749 05 35217313 35219098 Amo05g1749 05 35217313 35219098 PCT