Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1742 ATGAAGATTCCACCACCTCATCCTCCTCCTCCAATTAATGGTTTTGATAAACTTGATTTTGTTAGCCATTCACAACCAAAACCACCCTCCATTTCTTCATCATCAACTCCTACACCACTTTCACCTTCCACTCCAAGAATCCAAGATAGAAAAAGTTCAGCACCTACACTGCCGCCACCTCCACCACCTCCGCCACCAATTCCAAAGAGCCAAGCAGTGCCACCAGCATGTCCTCCACCAGTACCAGAAAGAAAGAGCCAAGCACCTCCACCACAACCACCTCCTCTTCCACCAATTACTGGTAGAAAGAGCCAAGCCCCGCCACCGCCGCCTCCACCGATTCCTTCTAGAAAGGGGCCACCAAAGGGAGGAAATCCAAAGTCATCATCAAAACCAACTCCTACCCCTATTGAAGCACCATCATACTCGAGAAAAGGCAAATCTAAAGATGAAGATATGCAAGAAACCGGCAATCGTCAAGTGAAACTGAAGCCTCTGCATTGGGATAAAGTCAATGCTAATCTTGATCACTCCATGGTTTGGGACAAAATTGACCGTGGCTCCTTCAGGGTCGATGACGATCTTATGGAAGCTCTCTTTGGCTATGTTGTTAACCACAACACCCCAAAAGCGAATGATTCAGGGAGTCCAAGCAAGGGTTCCTCTGCCTCAGCTCCATCAACAAAGGCATCCACCCTTCTTGACCCAAGAAAATCACAGAACACTGCCATTGTGTTGAAATCTCTTGCAATATCAAGAAAAGAAGTCATTGATGCACTCCTTGATGGTCATGGCCTCAACATAGACACCATTGAAAAGCTTTCTAGAGTTGCTCCAACAGAAGAAGAGCAATCTCTAATACTCCAATACAGAGGAGATCCTGAAAACCTTCCTGCAGCGGAGTCCTTCCTGTATCATACTCTCAAAGCTGTTCCTTCGGTGTTTAAGCGCTTGAATGCCATGCTGTTCAGGCTGAACTATGATGCCGAGATTGTCGAAATCAAGGAGTTTCTGCAGACACTTGAGTTGGGATGTAAGGAGCTTAGGAACCAAGGAGTGTTCCTGAAGCTTCTTGAAGCAGTGCTCAAGGCCGGAAATCGCATGAATGCAGGTACTCATAGAGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTTAGGAAACTTTCTGATGTGAAGAGCACCGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAGGAAGTGGTCCGATCTGAAGGCAAACGTGCTGTTCTCAATCGAGACTACAGCATGAGCCGAAGTAGCAGCAGAAGTAGAAGTAGCAGCAGTATTAGCAGTGGAAACACTGAGAATTCTGTTTCAGATGAACAAAGAAAAAGGGAATACATAATACTAGGATTGCCAATTGTTGGAGGGGTCAGTTCTGAGTTCTCCAATGTAAAGAAAGCAACACTAACAGATTACAAAAGTTTTGTTGGTTCAATCTCAGCACTTTCAGCAAGGATAGCTGAGATTCGACAACTCGTTTTGAAGTGTGGAGGAAATGATAAAGGAGGGAATTTTGCAAGAGAAATGAACCGTTTTCTATCAGAAGCCGAGGAAGAAGTGAAATTGGTGAGTGAAGAACATGGAAGGGTGATGCAGCTTGTGAAGAAAACAACAGCTTATTATCAAGGAGGAGGGGCATGGAAAGAGAGTGAACAACCACTTCAACTGTTTGAGATAGTGAAGGATTTTCTGGGAATGGTTGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGGGCACAAAGTAG 1785 0.4493 MKIPPPHPPPPINGFDKLDFVSHSQPKPPSISSSSTPTPLSPSTPRIQDRKSSAPTLPPPPPPPPPIPKSQAVPPACPPPVPERKSQAPPPQPPPLPPITGRKSQAPPPPPPPIPSRKGPPKGGNPKSSSKPTPTPIEAPSYSRKGKSKDEDMQETGNRQVKLKPLHWDKVNANLDHSMVWDKIDRGSFRVDDDLMEALFGYVVNHNTPKANDSGSPSKGSSASAPSTKASTLLDPRKSQNTAIVLKSLAISRKEVIDALLDGHGLNIDTIEKLSRVAPTEEEQSLILQYRGDPENLPAAESFLYHTLKAVPSVFKRLNAMLFRLNYDAEIVEIKEFLQTLELGCKELRNQGVFLKLLEAVLKAGNRMNAGTHRGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRAVLNRDYSMSRSSSRSRSSSSISSGNTENSVSDEQRKREYIILGLPIVGGVSSEFSNVKKATLTDYKSFVGSISALSARIAEIRQLVLKCGGNDKGGNFAREMNRFLSEAEEEVKLVSEEHGRVMQLVKKTTAYYQGGGAWKESEQPLQLFEIVKDFLGMVDQACIEIARNMQKRKGTK* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1742 594 MobiDBLite consensus disorder prediction 207 234 - -
Amo05g1742 594 Gene3D Formin, FH2 domain 175 594 IPR042201 -
Amo05g1742 594 SMART it6_source 153 591 IPR015425 -
Amo05g1742 594 PANTHER FORMIN-LIKE PROTEIN 4 33 592 - -
Amo05g1742 594 MobiDBLite consensus disorder prediction 143 164 - -
Amo05g1742 594 SUPERFAMILY Formin homology 2 domain (FH2 domain) 166 590 - -
Amo05g1742 594 Pfam Formin Homology 2 Domain 156 576 IPR015425 -
Amo05g1742 594 MobiDBLite consensus disorder prediction 421 445 - -
Amo05g1742 594 ProSiteProfiles Formin homology-2 (FH2) domain profile. 153 594 IPR015425 -
Amo05g1742 594 MobiDBLite consensus disorder prediction 1 164 - -
Amo05g1742 594 MobiDBLite consensus disorder prediction 420 448 - -
Amo05g1742 594 MobiDBLite consensus disorder prediction 25 51 - -
Amo05g1742 594 PANTHER FORMIN-RELATED 33 592 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo05g1742 594 MobiDBLite consensus disorder prediction 54 120 - -
Amo05g1742 594 Coils Coil 515 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1742 Amo-Chr5 34992889 34996787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1742 123 591 FH2 protein (formin) Gene Family AT1G70140 55.414 2.93e-168 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1742 - - ccaj:109800353 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1742 05 34992889 34996787 Amo05g1742 05 34992889 34996787 PCT