Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1728 ATGAAGAGGTCTAGGGACGATATTTTCGCGAGTCCTCAACTTAAACGGCCTATAGTGTCTTCTCGAGGAGAAGCGTCCGGGCAACCCCAGATGATGAATGGAGGTGCTGTTYRTCAGAAGCTYACTACAAATGATGCATTGGCATATCTCAAGGCAGTYAAGGATATATTTCAGGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTCATGAAAGATTTTAAGGCTCAAAGAGTTGATACTGCAGGCGTGATAGCAAGGGTTAAACAGCTCTTTAAAGGGCACAGAGACTTGCTTTTGGGATTCAACACCTTCTTGCCAAGGGGTTATGAAATCACACTTCCACTGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCGATTAATTTTGTGAACAAAATTAAGACCCGGTTTCAAGGTGATGATCGTGTTTACAAGTCATTTCTGGACATATTAAATATGTACAGGAAGGAAAGCAAGTCTATAACAGATGTCTACCAGGAGGTTGCTGCACTTTTCCAAGAGCATCCGGATCTTCTTGATGAGTTTACTCATTTTCTCCCGGACACTTCCTCAGCAGCCTCTGCTCATTATATTTCTGCTAGAAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACTGTACGGCAAATGCATGTTGAGAAGAGAGAAAGGACTATGACCTCACATGGTGATCGTGACCTCAGTGTTGACCGTCCTGACCCTGATAATGACAGAGGTTTGATGAGGGCAGAAAAGGATCAGAGGAGACGTCTAGAGAAGGATAAGGAACGCAGAGAGGAGAGAGATAGGAGAGAACGTGACAGAGATGATAGAGATTATGAGCATGATGGTGGTCGAGATAGGGAAAGGTTCTCCCATAAACGGAAATCTGATCGTAGGGCTGAAGACTCTGGAGCCGAACCATTGCTCGATGATGAACATATTGGTATGCGCCCTATGCCATCCACTTGTGATGAAAGAAATACTCTTAAAAGCATGTATAGCCAGGAGCTTGCTTTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTGCATATTTACAGCAGGGAAATAATTACCAGACATGAATTGCAGTCATTGGTTGGTGATTTACTGGGGAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGATACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGAGTGACGGACAAAGGCCGAAATCTGTGAAGGTTGAAGACAGAGATCGTGATCGAGACCGTTGTAGGGATGATGGCATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGACAAATCCACTGCCCCCGCCAACAAGGATGTTTCAGGTCCTAAGATGTCCATATATCCCAGCAAGGATAAGTATTTGTCAAAGCCTATAAATGAGCTGGACCTTTCTAACTGTGATCAATGCACTCCGAGCTATCGTCTATTGCCAAAAAATTACCCAATACCTGTAGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTAAATGATCACTGGGTGTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGSAAAAATCAGTATGAAGAGAGCTTGTTCAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGCTAGAGTCTGTAAATGCAACTACTAAGCGAGTGGAAGAGCTGTTAGAAAAGGTCAATAATAATATAATCAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCCTTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTAGATGTGATGGATGTGTTACGGAAAAATGCATCTCTGGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAAGATGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTCTGGGCTGAAATATATGCCAAAAATTATCATAAATCTCTTGATCACCGTAGCTTCTACTTTAAACAACAGGATACAAAAAGCTTGAGTACTAAAGCATTACTGGCCGAAATCAAAGAAATCAGTGAGAAGAAACGCAAAGAAGATGATGTTCTTCTTGCGATTGCTGCTGGAAATAGACGTCCTGTTCTTCCAAACCTTGAGTTTGAGTACACTGATTCTGATATTCATGAAGATCTGTATCAGCTTGTAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAATTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATTCTGTGTGTTCCTTCTCGGCCTCTGGGTGCCGAGGATACAGAAGATGTTGTCAAGGATAAGAATAATTCTGCCAAAAGTGGCACTGCAAGTGTTGCCGAGAGTGAGGGTAGTGCTGGTGCTGGTGCTGGTGCTATTGTAGTGAATCCTAAGCATATTAACACTTCTAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAAATTCTAGCAAAGTATGGCAATCAAATGGTGACAGTGGTGCAAAAGATGATAAATGTCTTGATTCAGACCGCACTCTGCATAAAACTGAAACTTCAGGCACTAATACACAGCATGGTAAAATTAATACTAGTTCATTCACACCTGATGAAATGTCAGGAGTCAATAAGCAAGACCACTCCAGTGAGCGGTTGGTGAATGCTAATGTTTCACCAGCATTAGGAGTGGAGCTAAGTAATGGAAGAACAAGCATGGATAATGCATCAGGAATCATTGCCACTAATCCGTCTAGACCTGGTAATATTTCTGGCGAAGGTGGAGTTGATTTACCTTCATCAGAGGGTGGTGATTCTACCAGACCAGGTACATCCACAAATGGGACCATCACAGAAGGGACCGAAGTTCACAGGTACCCAGAAGAATCAGTTCGGCAGTTAAAAAGTGAAAGAGAAGAGGGCGAGTTGTCCCCAAATGGAGACTTTGAAGAGGATAACTTTGCTGTTTATGGAGATACTGGTTTGGATGCAGTCCATAAGGGGAAGGATGGCGGTTCGAGTCAGCAATACCAAAACAGAAATGGAGAACAAGCTTTAGGTGAAGTTAGAGGAGAGAATGATGTTGATGCTGACGATGAAGGTGAGGAAAGTCCACACAGGTCATCTGAGGACAGTGAGAATGCTTCRGAGAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAATCTCGAGAAGAGCARGAGGATGGGGAAAATGATAACAAAGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGAGATGGAACCTCCTTGCCATTTTCAGAGCGCTTCCTATTAACTGTAAAGCCACTGGCGAAGCATGTTCCCCCAGCGTTACACGAGAAAGAAAGGACTTCTCGAATTTTTTATGGAAATGATTCCTTTTACGTCCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAATGGGGGGCTTCAAATAATACGGGTTCTACTGATCAATACAACAGGTTCATGAATGCGCTCTACAATTTGCTGGATGGTTCATCTGATAATACAAAATTCGAGGATGATTGTCGAGCCATTATTGGAACTCAGTCATATCTCTTATTCACTTTAGACAAGCTGATTTATAAGCTTGTTAAACAGCTTCAAAATGTTGCCACTGATGAGATGGATAACAAGCTTCTCCAATTATATGCCTATGAGAAATCAAGAAAACCAGGAAGATTTGTTGACGCAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGAAGAGAACATATACCGAATTGAATATTCACCTGGACTTAAGAAATTGTCTCTTCAACTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCCGTGTCAATGGACCCCAACTTTTCAGGCTATTTGTACAACGAATTTTTTTCTGTTGTCTCTGACAAAAAGGAAAAGTCTGGAATTTTCTTGAAGAGGAACAAACGTAGATATGCCTGTGGTGATGACATTTCAAGTGAGGCTGTGGAAGGACTACAAGTTATTAATGGTCTTGAGTGTAAGATATCTTGCAGTTCATCCAAGGTGTCATATGTTTTAGATACGGAAGATTCTTTGTTCCGGAAGAGAAAGAATAGGGCAAAGTCTTTAACCATTAGTTCGAGAAGAGCACAACGGTTCCACAAATTGTTTTCCCTTGCATGCTGA 4263 0.415 MKRSRDDIFASPQLKRPIVSSRGEASGQPQMMNGGAVXQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRVDTAGVIARVKQLFKGHRDLLLGFNTFLPRGYEITLPLEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNMYRKESKSITDVYQEVAALFQEHPDLLDEFTHFLPDTSSAASAHYISARNSMLRDRSSAMPTVRQMHVEKRERTMTSHGDRDLSVDRPDPDNDRGLMRAEKDQRRRLEKDKERREERDRRERDRDDRDYEHDGGRDRERFSHKRKSDRRAEDSGAEPLLDDEHIGMRPMPSTCDERNTLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLIQSEKNDGGFLAGVMNKKSLWSDGQRPKSVKVEDRDRDRDRCRDDGMKERDREFRERDKSTAPANKDVSGPKMSIYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKVNNNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPVLPNLEFEYTDSDIHEDLYQLVKYSCGEMCTTEQLDKVMKVWTTFLEPILCVPSRPLGAEDTEDVVKDKNNSAKSGTASVAESEGSAGAGAGAIVVNPKHINTSRNGDECMPLDQSNSSKVWQSNGDSGAKDDKCLDSDRTLHKTETSGTNTQHGKINTSSFTPDEMSGVNKQDHSSERLVNANVSPALGVELSNGRTSMDNASGIIATNPSRPGNISGEGGVDLPSSEGGDSTRPGTSTNGTITEGTEVHRYPEESVRQLKSEREEGELSPNGDFEEDNFAVYGDTGLDAVHKGKDGGSSQQYQNRNGEQALGEVRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEESREEQEDGENDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVPPALHEKERTSRIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWGASNNTGSTDQYNRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQNVATDEMDNKLLQLYAYEKSRKPGRFVDAVYHENARVLLHEENIYRIEYSPGLKKLSLQLMDYGHDKPEVTAVSMDPNFSGYLYNEFFSVVSDKKEKSGIFLKRNKRRYACGDDISSEAVEGLQVINGLECKISCSSSKVSYVLDTEDSLFRKRKNRAKSLTISSRRAQRFHKLFSLAC* 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1728 1420 ProSiteProfiles PAH domain profile. 337 406 IPR003822 GO:0006355
Amo05g1728 1420 Coils Coil 255 275 - -
Amo05g1728 1420 SUPERFAMILY PAH2 domain 36 108 IPR036600 GO:0006355
Amo05g1728 1420 MobiDBLite consensus disorder prediction 428 478 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 430 466 - -
Amo05g1728 1420 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 836 - -
Amo05g1728 1420 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 960 1401 - -
Amo05g1728 1420 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Amo05g1728 1420 MobiDBLite consensus disorder prediction 819 892 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 223 268 - -
Amo05g1728 1420 Gene3D Paired amphipathic helix 335 407 IPR036600 GO:0006355
Amo05g1728 1420 MobiDBLite consensus disorder prediction 969 990 - -
Amo05g1728 1420 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Amo05g1728 1420 Pfam Paired amphipathic helix repeat 359 403 IPR003822 GO:0006355
Amo05g1728 1420 Pfam Paired amphipathic helix repeat 149 192 IPR003822 GO:0006355
Amo05g1728 1420 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Amo05g1728 1420 SUPERFAMILY PAH2 domain 123 194 IPR036600 GO:0006355
Amo05g1728 1420 MobiDBLite consensus disorder prediction 283 327 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 922 936 - -
Amo05g1728 1420 Coils Coil 566 590 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 1047 1061 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 922 1113 - -
Amo05g1728 1420 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Amo05g1728 1420 MobiDBLite consensus disorder prediction 865 892 - -
Amo05g1728 1420 Pfam Sin3 family co-repressor 500 590 IPR013194 -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 951 967 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 1077 1092 - -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 850 864 - -
Amo05g1728 1420 SMART hdac_interact2seq4b 497 597 IPR013194 -
Amo05g1728 1420 Gene3D Paired amphipathic helix 124 196 IPR036600 GO:0006355
Amo05g1728 1420 PANTHER SIN3B-RELATED 960 1401 IPR039774 GO:0003714
Amo05g1728 1420 PANTHER SIN3B-RELATED 1 836 IPR039774 GO:0003714
Amo05g1728 1420 MobiDBLite consensus disorder prediction 214 268 - -
Amo05g1728 1420 Pfam C-terminal domain of Sin3a protein 1145 1391 IPR031693 -
Amo05g1728 1420 MobiDBLite consensus disorder prediction 283 333 - -
Amo05g1728 1420 SUPERFAMILY PAH2 domain 337 403 IPR036600 GO:0006355
Amo05g1728 1420 MobiDBLite consensus disorder prediction 819 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1728 Amo-Chr5 34541785 34554173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1728 28 144 WRKY Transcription Factor Family AT4G12020 50.427 1.01e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo05g1728 Sin3a_C 2e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1728 K11644 - gmx:100811928 2237.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1728 05 34541785 34554173 Amo05g1728 05 34541785 34554173 PCT