Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1712 ATGCCCCACACTGCCGTCTCCCTCTCTCACACGCGTCACGCCAACTGTCAGCACTACTCGTCAAGCAACTCGTCAGTGCAACTTATCAGCACCAACCCGTCAGTGTCAATCGTCATTCTGCTAGTGCCGACATCTCTGGTGTTTATCCATGAATCGGCGGCAGGATCCGGAAGGAAGCGATGGGTGGCGTCTCCGTCAAGCTCAACGCTGGATGCATCGCTGGCGTCGGTGGGGTCATGCTTTCATCGTATTATTAAGGGTTTTATGATCCAAGGAGGCGATATTTTTGCTAGAGATGGTACTGGAGGAGGATCTATATATGGATTGAAGTTTGAAGATGAAAATTTTGAATTGAAGCATGAAAGGAAAGGGATGCTACCAATGGCAAACTCTGGTCCAAACACGAATGGGTCTCAGTTCTTTATCACCACTACTCGAACTTCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTTAAGGGAATGGGAGTGGTCCATTCGATTGAGCATGTTACTACCAGAGATGATGACCGTCCTACTCTTGATGTGAAAATTGTGGATTGTGGAGAAATTCCTAAAGGAGAAGATGATGGAATCTCCAACTTTTTCAAAGATGCTAATACTTATCCTGATTGGCCAGCAGATCTTGATGAGAGTCCTAATGAACTTGAATGGTGGATGGAACCTTTTAACAACATTAAAACTTTTGGTAACGATTATTACAAGGAAAAAACTAATTCTTTTTCGTTACAGAAACAAGATTACAAAATGGCTCAAAAGAAGTATCGAAAGGCTTTGTGCTACCTAGATATTTGTTGGGAAAAAGAGGGGATTGATGAATGCAAGCTGGCCTGTCTACTATTTATTTTGGCAGAGACATTAAATTGTAATTGCATTTCGCCTCCTTTAAATGTGGATAACATAGTTGCGTTTATGCCTTTGCAAAGAAAAGTTCAGGTTTGA 969 0.4221 MPHTAVSLSHTRHANCQHYSSSNSSVQLISTNPSVSIVILLVPTSLVFIHESAAGSGRKRWVASPSSSTLDASLASVGSCFHRIIKGFMIQGGDIFARDGTGGGSIYGLKFEDENFELKHERKGMLPMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVHSIEHVTTRDDDRPTLDVKIVDCGEIPKGEDDGISNFFKDANTYPDWPADLDESPNELEWWMEPFNNIKTFGNDYYKEKTNSFSLQKQDYKMAQKKYRKALCYLDICWEKEGIDECKLACLLFILAETLNCNCISPPLNVDNIVAFMPLQRKVQV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1712 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Amo05g1712 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Amo05g1712 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Amo05g1712 322 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Amo05g1712 322 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 73 288 - -
Amo05g1712 322 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 42 192 IPR002130 GO:0000413|GO:0003755
Amo05g1712 322 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 73 288 - -
Amo05g1712 322 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 78 191 IPR002130 GO:0000413|GO:0003755
Amo05g1712 322 SUPERFAMILY Cyclophilin-like 78 195 IPR029000 -
Amo05g1712 322 Gene3D - 56 199 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1712 Amo-Chr5 34036769 34040789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1712 78 190 U-box Gene Family AT5G67530 48.246 3.90e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1712 K05864 - gmx:100813496 357.451