Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1696 ATGTGTACAGAAATTTCATCAACACCAGGAGCTTTTAGACTCCGTTGGGACGTGTTCTTGAGTTTCAGGGGACCAGACACGCGCCACTCCTTCATAGCACCACTCTACGACGAGCTCCAATTGCGTGGCGTTAGAGTCTTTCGCGACGACGATGGATTGGAGCGCGGCGACGAAATTGCTCCTACTCTGCTCGAAGCCATTGACGATTCTGCCGCCTCCATTGTTGTTCTCTCGCCTAACTATGCAGGATCCCGGTGGTGCCTTGAGGAGCTGGCAAAGATCTGTGACTCTGACAAGCTCATTCTCCCTGTGTTCTATGGTGTTGATCCAAGAGATGTTAGGAAACAAATCGGTCCCTTTGAAGAGGCTTTTAGGATCAAAGAAAAGAAGTTTGATGCAGTTAAGGTTTCGAGGTGGAGGAAGGCCATGACGAGAGTGGGTAACCGAGCTGGTCTTCTTCTTGATGATCAAACCAGTGCTGAACGCCGAGCTACTTTGATAAGAGAATTGGTGACAAGGGTTTTGAGAGAATTGAGCAACACTCCCTTAGGTGTTGCTCCATTTACAGTTGGGCTCGATCGCCGTGTCCAAGAGTTGCTGAATTCGTTAGAGCTCAAATCCAACGGTTTCAAATTGTTTGGGCTATATGGCATGGGCGGTGTTGGAAAGACAACTCTTGCCAAGACTCTCTACAACAACCTCGTTGCTAATTTTGAACACCGCACCTTCATTGCAAATGTCAGAGAAGCTTCGTCAAAAGATAACGGCTTGGTTTCTCTTCAAAAGAGAATCATTGGTGATCTAAAACCCGATTCTTCCAACTCCATTCAAATCAATAACATAAATTCAGGCATTGCTGCAATCAAAAGGTTAGTTGCAGAAAACAGAGTGCTAATAGTCTTAGACGATGTTGATGATACAGAACAGCTTCATTCTCTGTTTGGAAAAAAGGAATGGTTTTACGAAGGAAGCCGCGTTATCGTCACTACAAGGGATAGGAAACTCTTACTTGATAACAATGTTGATTTGGTTTATGAGGTTAAAGAATTGAGTTCAACTGAATCATTGCAACTATTCAGTAATCACGCTTTTAAAAGAAAGCATCCTCCAACACAAGAATTTCTTGGGCTATCGGAACAGATAGTAAAGCTAACTGGAGGATTACCATTGGCACTAGAAGTGTTTGGTTCGTTCTTGTTTGACAAAAGAAGGGTGGAAGAATGGGTGGATGAACTCGAAAAGCTGAAGCGGATTCAGCACAAGAACCTCCAAGATGTGCTCAAGATAAGCTACGATGGGTTGGATGAAGAAGAGAAAACGGTGTTCTTGGACATTGCTTGTTTGTTGGTGCAAATGGAGATGAAGAGAGATGAAGTGGTTGATGTTGAAAGAGGTTGTGGTTTTAGTGCAGAGGTAGCAATCACCGTTCTTACGTTAAGGTGTTTGATTAAGATCGGTGAGGACAATACTGTAATTGTGCATGATCAAATCAAAGGCATGGGAAGGCAAATTGTTGAAGATGAAGGGCGTGTTGATGGGGGAATGCGAAGCAGGTTTTGGAAACGTGATGAAATATTGAACGTTTTGCGAGGGAATAAGGGAACAAGATTTACACAAGGGATCACCCTCGATTTTCAGGGAAAATATATTCTCAATGATGCAGAAGCTGAAACAATTTTGAGGCACAAACTTCAATGCACGTCCATCATAACAAATCCATCAGCATTTTTTAAATCAATCCTTGCCAAGAAAGAAAAAGGGCTTACACTCCAGACAAAATCATTTAAATCAATGGTGAACTTGAGACTACTTGAGATCAATAATTTGAGAATGGAAGGGAAGTTTCAATTTCTTCCCTCTGAAATCAAATGGCTACAGTGGCAAGGATGTTCTTTCAAAACCCTGCCTTCTGACTTTTGGTCACAGAAATTCACTGTCCTTGATCTCTCACACAGCAATATTGAAAGCTTGTGGGGCTTGAGAACCAAAAAGGTGCCAGAGAATTTGAAGGTTCTGAATCTCTCCCTCTGTAGGAATCTAACCTCAATTCCTGATTTATCTTCTTGTGCAAGTTTAGACAAGCTTGTACTTGAAAGATGCACTTCTCTAACAAGCATTCATGAGTCAATTGGGAGCCTCAGTGCATTACACGATTTGAATTTGAGCTACTGTTCAAATCTTAAGGAACTTCCCTACGACGTATCTGGGCTGAAAAATCTAGAGAACATGTTGCTCACCGGCTGTGCGAAACTAAAAGCCTTGCCATCAAACATGGGCCACATGAAGTCACTGAGAAAACTACTTGCTGATAACACTGCCATTGCTGAGATACCTGAATCAATCTTCAGCCTGGAAAGACTTGAAATGCTTGTATTAGATGGTTGCCAAAATCTGAAAAGGCTTCCGAATTGTATCGGAAACCTGACTTCTCTGCAAGTACTCTCCCTTGATCAGTCTGCATTAGAAGAACTACCTAACTCAGTTGGGTCACTTGCAAGCCTTGAGATACTTAGTTTGAGGTGGTGTCAATCTCTCACTGCAATTCCTGAAACTATTGGCAATCTCATATCATTGACAAGACTTTCAGTTAATTGTAGTGAAATCAAAGAACTCCCTTCTTCTATTGGTTCATTATCATCTTTGAAGGAGCTATCAGCTGGACAATGCAAGCTTCTCGGTCAATTGCCGGACACAATTAACGGCTTAGCTTCAGTAGTTGAGCTTCAGTTAGATGGTACAGCGATTGCGAATTTGCCGGATCAGATTGGAGCTATGATAATATTAAGGAAATTTGAAATGAGGAATTGCATTAATCTTAAATCATTGCCTGAATCTATTGGCAGATTAGCAGCACTAACTACTTTAAACATAAGTAATTCAACTATAGAGGAACTTCCAGAGTCCATTGGCTTGCTGGAGAATCTTGTTACATTAAATATGAACAAATGCAGAATGCTCAAAGAGCTTCCAACATCAATTGGAAAATTGAAGGAATTGCACCACTTGATGATGGAGGAAACTGCACTAACAAAGTTACCTGAAACATTTGGTTTGCTCTCAAGCTTGATGACACTGGAAATGGCGAAACGACCACATTTGGTTGCGAATGATGATAGATTTCCTGCAGAGGAAGAAAATGCTCATCATTCTTTTCAACTTCCAACTAACTTCTGTGATCTGACTCTGTTAAATGTATTGGATGCTCGAGCTTGGCGAATATCGGGGGAAATTCCCAATGATTTTGAGAAACTATCATCATTAGAAAAATTGGATTTATCTCAAAACAATTTTCACAGCCTTCCATGTAGCTTGAAGGGACTCTCAATCCTCAAAAGGCTTTACTTGCGAGATTGCATTCAGTTGAGATCTCTGCCTTCTCTTCCTTCAAGCTTGATTGAGTTGAATGCTGAAAACTGCACCTTGTTGGAAAATGTATCTGAGGTTACAGACTTAGAGTGCTTACAAGAGTTAGATCTCACAAACTGCGTGAAAGTGGTGGATATTCCAGGGCTTGAAAGCTTGAAATCTTTGAGAAGAATGTATTTAGGTGGCTGTATTGCATGCTCCTCTCAAGTAAGGAAAAGACTTTCAAAGGTTGCATTAAGGAATATAAGAAACTTGAGCATGCCGGGAACCAAATTTCCCGAATGGTTTTCGAGACAATCTGTGAACTTTACCAAGCACAAAAACCGTGAGCTAAAAGGTATTGTTATATGCATTGTTCTTTCCATCAACCATAGCATTCCCAATAATGGCATGATGCCTGGAATTGTCGATGTTGTGGCAACTGTTCTCAAATCGGGCAAACAAGTGTATAGTACTTCAGTATACCTACGTGGGGTGCCAAAAACAAACCAAGAACACATGCACATGTGTCGCTTTGCAGATTTTCATCCATTAGTGCATTTTATGAGAGATGGAGGTACATTATGTGTGACTACGAGAAACCCTCTCGTAGATAAGAGGTTGGACCTGAAAGATTCTGGAATTCATTTGATCTTAGAAGGGGATGATGATTATGGGGGAGATGAGAGTTCTGTGGAGCCAAGCTTGAAATCTGTCTCAGAAAAAATGGCAGAGTTTTTTAATTCTGTAGAAGATGCATATGACCCTGAACCTGGTGGTGCAAATGAGTCTGAAGATTAG 4146 0.4132 MCTEISSTPGAFRLRWDVFLSFRGPDTRHSFIAPLYDELQLRGVRVFRDDDGLERGDEIAPTLLEAIDDSAASIVVLSPNYAGSRWCLEELAKICDSDKLILPVFYGVDPRDVRKQIGPFEEAFRIKEKKFDAVKVSRWRKAMTRVGNRAGLLLDDQTSAERRATLIRELVTRVLRELSNTPLGVAPFTVGLDRRVQELLNSLELKSNGFKLFGLYGMGGVGKTTLAKTLYNNLVANFEHRTFIANVREASSKDNGLVSLQKRIIGDLKPDSSNSIQINNINSGIAAIKRLVAENRVLIVLDDVDDTEQLHSLFGKKEWFYEGSRVIVTTRDRKLLLDNNVDLVYEVKELSSTESLQLFSNHAFKRKHPPTQEFLGLSEQIVKLTGGLPLALEVFGSFLFDKRRVEEWVDELEKLKRIQHKNLQDVLKISYDGLDEEEKTVFLDIACLLVQMEMKRDEVVDVERGCGFSAEVAITVLTLRCLIKIGEDNTVIVHDQIKGMGRQIVEDEGRVDGGMRSRFWKRDEILNVLRGNKGTRFTQGITLDFQGKYILNDAEAETILRHKLQCTSIITNPSAFFKSILAKKEKGLTLQTKSFKSMVNLRLLEINNLRMEGKFQFLPSEIKWLQWQGCSFKTLPSDFWSQKFTVLDLSHSNIESLWGLRTKKVPENLKVLNLSLCRNLTSIPDLSSCASLDKLVLERCTSLTSIHESIGSLSALHDLNLSYCSNLKELPYDVSGLKNLENMLLTGCAKLKALPSNMGHMKSLRKLLADNTAIAEIPESIFSLERLEMLVLDGCQNLKRLPNCIGNLTSLQVLSLDQSALEELPNSVGSLASLEILSLRWCQSLTAIPETIGNLISLTRLSVNCSEIKELPSSIGSLSSLKELSAGQCKLLGQLPDTINGLASVVELQLDGTAIANLPDQIGAMIILRKFEMRNCINLKSLPESIGRLAALTTLNISNSTIEELPESIGLLENLVTLNMNKCRMLKELPTSIGKLKELHHLMMEETALTKLPETFGLLSSLMTLEMAKRPHLVANDDRFPAEEENAHHSFQLPTNFCDLTLLNVLDARAWRISGEIPNDFEKLSSLEKLDLSQNNFHSLPCSLKGLSILKRLYLRDCIQLRSLPSLPSSLIELNAENCTLLENVSEVTDLECLQELDLTNCVKVVDIPGLESLKSLRRMYLGGCIACSSQVRKRLSKVALRNIRNLSMPGTKFPEWFSRQSVNFTKHKNRELKGIVICIVLSINHSIPNNGMMPGIVDVVATVLKSGKQVYSTSVYLRGVPKTNQEHMHMCRFADFHPLVHFMRDGGTLCVTTRNPLVDKRLDLKDSGIHLILEGDDDYGGDESSVEPSLKSVSEKMAEFFNSVEDAYDPEPGGANESED* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1696 1381 ProSiteProfiles Leucine-rich repeat profile. 1086 1108 IPR001611 GO:0005515
Amo05g1696 1381 CDD AAA 190 341 - -
Amo05g1696 1381 Gene3D - 14 179 IPR035897 -
Amo05g1696 1381 Gene3D - 180 342 IPR027417 -
Amo05g1696 1381 SMART LRR_typ_2 902 925 IPR003591 -
Amo05g1696 1381 SMART LRR_typ_2 996 1018 IPR003591 -
Amo05g1696 1381 SMART LRR_typ_2 808 831 IPR003591 -
Amo05g1696 1381 SMART LRR_typ_2 761 784 IPR003591 -
Amo05g1696 1381 SMART LRR_typ_2 1084 1106 IPR003591 -
Amo05g1696 1381 SMART LRR_typ_2 855 878 IPR003591 -
Amo05g1696 1381 SMART LRR_typ_2 949 972 IPR003591 -
Amo05g1696 1381 SMART till_3 15 149 IPR000157 GO:0007165
Amo05g1696 1381 PRINTS Disease resistance protein signature 212 227 - -
Amo05g1696 1381 PRINTS Disease resistance protein signature 711 727 - -
Amo05g1696 1381 PRINTS Disease resistance protein signature 291 305 - -
Amo05g1696 1381 PRINTS Disease resistance protein signature 385 399 - -
Amo05g1696 1381 PANTHER TMV RESISTANCE PROTEIN N-LIKE 13 1323 - -
Amo05g1696 1381 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515
Amo05g1696 1381 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 151 IPR035897 -
Amo05g1696 1381 Pfam NB-ARC domain 195 429 IPR002182 GO:0043531
Amo05g1696 1381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Amo05g1696 1381 SUPERFAMILY L domain-like 894 1216 - -
Amo05g1696 1381 Gene3D Ribonuclease Inhibitor 1044 1238 IPR032675 -
Amo05g1696 1381 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1323 IPR044974 GO:0006952
Amo05g1696 1381 Gene3D - 349 435 IPR042197 -
Amo05g1696 1381 ProSiteProfiles TIR domain profile. 14 174 IPR000157 GO:0007165
Amo05g1696 1381 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Amo05g1696 1381 Gene3D Ribonuclease Inhibitor 563 797 IPR032675 -
Amo05g1696 1381 Gene3D Ribonuclease Inhibitor 798 1037 IPR032675 -
Amo05g1696 1381 Pfam TIR domain 16 181 IPR000157 GO:0007165
Amo05g1696 1381 SUPERFAMILY L domain-like 590 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1696 Amo-Chr5 33508990 33520244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1696 16 884 WRKY Transcription Factor Family AT4G12020 29.040 1.97e-76 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1696 - - lang:109340539 1603.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1696 05 33508990 33520244 Amo15g0262 15 9713442 9722360 hybridization
Amo05g1696 05 33508990 33520244 Amo05g2813 05 73304041 73312005 PCT
Amo05g1696 05 33508990 33520244 Amo15g0262 15 9713442 9722360 PCT