Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1630 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCGGCGTCGACGTTTGGGCTTTCTTTGACGCTGCAATCGACGTCGCTTCCACCGATAACGCCGACGAATTGAAGCGCCGCCGGGACGGAATCGTGGAGCGCCTTTACGCCGCCACTGCCACGCCTCCCCGGTGTCTGAATTGCGAAGCAAATGCCGTCGAAGCACACAATCAGCAAAACAAATCGTCAGAGGACGAGGATTTGGATCCTTTTGGAGGCTTATTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCACCAACTTGAAGATCCTCACCAGTCGGAAGATTCGTTGGCGGAGTTGCTACAGAATCTGGCGGACATGGATATTACATTCCAGGCTTTAGAGGAAACTGACATTGGGAGGAACGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGCTGAAGGCACCTGGAGAACCTGCTACTGCTAGCACTGTCATTGGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACMAAATGGGCATCATCAGATTCCTGATTTTGCATGCTCGCCAAATCCAGAGAATGGCAATTTTGAGTCTTCCGAACCAAAACCAATTCCTCGCAAAGAAGCTCTGCCAAAACCAGCTCAAAAATCACCATCGCCATTACCATCGGTTCCCACTCCTCCTCCTCCTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACCTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGTTTTCTTTGGAAAGAACAAAGGCGGCATGGGTTCTCAGGGAAGGAAATGGTGA 957 0.4817 MDLDDFRSILDTAGVDVWAFFDAAIDVASTDNADELKRRRDGIVERLYAATATPPRCLNCEANAVEAHNQQNKSSEDEDLDPFGGLFDDEQKKILEIKHQLEDPHQSEDSLAELLQNLADMDITFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATASTVIGDDEDSPQQRNQXNGHHQIPDFACSPNPENGNFESSEPKPIPRKEALPKPAQKSPSPLPSVPTPPPPQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNVFFGKNKGGMGSQGRKW* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1630 318 MobiDBLite consensus disorder prediction 183 200 - -
Amo05g1630 318 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 175 IPR035441 -
Amo05g1630 318 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 318 IPR044790 -
Amo05g1630 318 MobiDBLite consensus disorder prediction 299 318 - -
Amo05g1630 318 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 318 - -
Amo05g1630 318 Coils Coil 111 131 - -
Amo05g1630 318 SMART TFS2_5 94 165 IPR003617 GO:0005634
Amo05g1630 318 MobiDBLite consensus disorder prediction 176 265 - -
Amo05g1630 318 CDD TFIIS_I 91 164 - -
Amo05g1630 318 Coils Coil 260 287 - -
Amo05g1630 318 MobiDBLite consensus disorder prediction 234 251 - -
Amo05g1630 318 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 172 IPR035441 -
Amo05g1630 318 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Amo05g1630 318 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1630 Amo-Chr5 30763394 30766219 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo05g1630 Med26 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1630 - - aip:107630962 606.675