Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1625 TGTTCGACGAAATGCCTGAATCATGCACTCCCTCACCACCGCACCCTCTTTTTCTTCCCTTTCTTTCCATTTCTTTCCCCACCGCCACCGCCACCGCCACACCCTCTTTCAGTTAACTCCTCCCTTCATCTTCTCCTTCCGGTACACCACCGCCAAGAGGCTCCAGGTGCAGCTCCAGGTGCAGGAGGAGAAATCACTGAGGAAGAAAAAAGGGAGGAAGGGTCTTTGCTGCAAGGAGGACTTGGTTATGAGCTAGTGCCTCAGTTTAGTTTCTCAGATTTGAGACGGGATATCGAAGTTGAGGAGTCAGGCATTGAGGGTATATTGAATCGGCTGGAGAGACAGAGAAGTAATTCCTTTGGACTTGGGTTAACAGAGAAAGATGAAAGTGATCCTTCCAGAAACAGTGAAGATAAAGATACAGATCAGAAGAACTCATCAGATGATCTAGCAAAGTATTCCGATGCTTGGGAATTCCAAGAAACTGAGATAATGAATGCTCAGGACAGACTGCGCTCCATACGTGCTAAGTTGGATGCACACAAAATTGTTGAAGAGAAGCAGAAGAGGATTAATAATGCTCACAGAGCCTTGCAAATTCTGAAGATGATTTGTGTAGTTTGGCATAATCCAGCTTCACAAGTATATTTAGTAGGATCCTTTGATGGTTGGTCCACCCAGAGAAAAATGGAGAAATCAAATACTGGCATGTTTTCTTTGAACTTGCAGCTATATCCTGGAAAATACGAGATCAAATTCATTGTTGATGGTGAATGGAAAGTTGATCCACTGCGGCCTATTGTTGTTACCAATAAAGGTTATGAGAACAATCTCCTCGTGGTTCCTGATTAG 852 0.4413 CSTKCLNHALPHHRTLFFFPFFPFLSPPPPPPPHPLSVNSSLHLLLPVHHRQEAPGAAPGAGGEITEEEKREEGSLLQGGLGYELVPQFSFSDLRRDIEVEESGIEGILNRLERQRSNSFGLGLTEKDESDPSRNSEDKDTDQKNSSDDLAKYSDAWEFQETEIMNAQDRLRSIRAKLDAHKIVEEKQKRINNAHRALQILKMICVVWHNPASQVYLVGSFDGWSTQRKMEKSNTGMFSLNLQLYPGKYEIKFIVDGEWKVDPLRPIVVTNKGYENNLLVVPD* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1625 283 CDD E_set_AMPKbeta_like_N 203 281 - -
Amo05g1625 283 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 90 137 - -
Amo05g1625 283 Gene3D Immunoglobulins 197 283 IPR013783 -
Amo05g1625 283 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 90 137 - -
Amo05g1625 283 MobiDBLite consensus disorder prediction 53 74 - -
Amo05g1625 283 MobiDBLite consensus disorder prediction 127 149 - -
Amo05g1625 283 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 136 281 - -
Amo05g1625 283 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 136 281 - -
Amo05g1625 283 SUPERFAMILY E set domains 203 282 IPR014756 -
Amo05g1625 283 MobiDBLite consensus disorder prediction 120 149 - -
Amo05g1625 283 Pfam Glycogen recognition site of AMP-activated protein kinase 206 281 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1625 Amo-Chr5 30657403 30661027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1625 204 283 Protein tyrosine phosphatase (PTP) family AT3G01510 31.707 2.60e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1625 - - adu:107485831 318.546