Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1621 ATGGCGAGTGGTAAGCTTTATGGGGGTTCCAGCATGTCCCTTCTGCTCCAAAACGAGAGTAGACTTCCCTCTTCATCTCAAGTTCTTGACTCTCTTTGGCTTCACACCTCTGACCCTTCTTCTTTCCAAGGTTCAAAAAACATGGTTGTTGATTTTGAGAATGGAAGAGGAAGCAGCATAAGAGACAGAAGCTTCTTCCAACAAGGGCTAATAGAAAAAGAAGAGAATAATAATAACGGGTGTGATGACGATTATGACCCTTCATGCTTCCAACAAACGGGTAGTAACGGTGGTAACAGCAAGAAACGGAGGCTAACGAGCGAGCAGGTTCAGTTCCTGGAACGAAGCTTCGAGATGGAGAACAAGCTCGAACCCGAAAGAAAAGTTCAGCTTGCGAAAGAGCTTGGGTTGCAGCCAAGGCAAGTGGCGATTTGGTTCCAAAACCGAAGGGCAAGGTTCAAGACGAAGCAGCTTGAAAAAGAGTATGGTGCACTGAAAGCTAGCTTTGACAAACTCAAAGGTGACTATGAAAGTCTTCTTCAACAGAATGACAAGTTAAAACAAGAGGTGAATGCTCTTAGGAACAAGTTGATTCCTAGAGATAAAGAGGATGAGAATTGTTCTTCAGATGAAAAATCATCTCCACAGGATGTTGATACAATCAATTCAAACCACAACAAGGAGGAGGATGAGCCTGTTATGATGGAATTGATGATCTCAAATTCAACCTCAAATGAAAATGGATCTAAGATGCCATTGCCACACCCAATCATTTTGACATGCAAGCAAGAAGATGCAAATTCAGCGAAAAGTGATGTCCTCGACGATTCGGCCGATAGTCCACATTGTACTAATAATGGAAACCACGACCACCACCACCACCATTTCTCGTCGTTCATGGAGGAGGAGCCGGCTGATTCGGATGATTTCTCGCAGGATGACGATGATAATCTTAGCGAAAACCTATTGACTCTTCCTTGTTTGCCTAAGGTTGAAGATAATGATGCATGCTACCATGAACAAAATGAGAACACTTGTGGCTTTGGTTTTCCAGTAGAAGACCAAACCTTTTGTTTCTGGCCTTACTAA 1089 0.4316 MASGKLYGGSSMSLLLQNESRLPSSSQVLDSLWLHTSDPSSFQGSKNMVVDFENGRGSSIRDRSFFQQGLIEKEENNNNGCDDDYDPSCFQQTGSNGGNSKKRRLTSEQVQFLERSFEMENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGALKASFDKLKGDYESLLQQNDKLKQEVNALRNKLIPRDKEDENCSSDEKSSPQDVDTINSNHNKEEDEPVMMELMISNSTSNENGSKMPLPHPIILTCKQEDANSAKSDVLDDSADSPHCTNNGNHDHHHHHFSSFMEEEPADSDDFSQDDDDNLSENLLTLPCLPKVEDNDACYHEQNENTCGFGFPVEDQTFCFWPY* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1621 362 Coils Coil 169 196 - -
Amo05g1621 362 MobiDBLite consensus disorder prediction 269 317 - -
Amo05g1621 362 SMART HOX_1 99 160 IPR001356 GO:0003677
Amo05g1621 362 Pfam Homeobox associated leucine zipper 156 197 IPR003106 GO:0006355|GO:0043565
Amo05g1621 362 Pfam Homeodomain 101 154 IPR001356 GO:0003677
Amo05g1621 362 MobiDBLite consensus disorder prediction 197 232 - -
Amo05g1621 362 Gene3D - 93 163 - -
Amo05g1621 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 362 IPR045224 GO:0003700
Amo05g1621 362 MobiDBLite consensus disorder prediction 197 212 - -
Amo05g1621 362 MobiDBLite consensus disorder prediction 285 302 - -
Amo05g1621 362 SUPERFAMILY Homeodomain-like 87 158 IPR009057 -
Amo05g1621 362 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Amo05g1621 362 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 362 - -
Amo05g1621 362 PRINTS Lambda-repressor HTH signature 127 136 IPR000047 GO:0003677
Amo05g1621 362 PRINTS Lambda-repressor HTH signature 136 152 IPR000047 GO:0003677
Amo05g1621 362 CDD homeodomain 101 157 IPR001356 GO:0003677
Amo05g1621 362 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1621 Amo-Chr5 30064923 30067546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1621 101 230 Homeobox Transcription Factor Family AT3G01470 56.818 4.31e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g1621 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1621 - K09338 adu:107489132 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1621 05 30064923 30067546 Amo15g0318 15 11914897 11917507 hybridization
Amo05g1621 05 30064923 30067546 Amo05g1621 05 30064923 30067546 PCT
Amo15g0318 15 11914897 11917507 Amo05g1621 05 30064923 30067546 PCT