Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1603 ATGATGAAAGCATACAATTTATTCATTTCACTATGTATTGTTCTCATTTTGCCAACCTTAAATGGCAATACGTTAGAGAATACTACAAATTCGGAAGATGATTTCCAAGTTTCAGACATAGAAGAAAAACTTTGGCAGGAAATGGAAGCAAGAGCTGAAAAGACCAACCGAGAAGCATATTTTACAAACCCATATGAAGTCTCTAAAAACTTCACTTCTATCATTGCGGAAGACGTAGAAGGGCACAATAACACAAGGAGAAGCTTGAAAGGGAAAAAGGCAGGGCTTCCATGCACGGCAACGAACCCCATTGATAGATGTTGGAGATGTGATCCTAACTGGGAAAAAGATCGCCAAAAACTTGCAACTTGTGTTCTGGGTTTTGGAAAAAATACTATTGGTGGAAAAGGTGGTGAGTTTTATACGGTTACGGATCCTTCCGACGACGACATTGTTAATCCAAAACCAGGTACCCTGCGATATGCAGTGACTAGGGATAGACCCTTGTGGATAATCTTTTCACGTAACATGAACATTAAGCTGACCCAGGAGCTCTTGGTGTCAAGTGACAAGACCATTGACGGAAGAGGAGTTGATGTTCACATTAGTAAGGGATGTGGCATCACTATTAACTACGCCCAAAATGTAATCATCCATGGGATCAAGGTATATGACATTAAACCCGGTGTTGGTGGACGTATTAGGTACGGTGAGGGAGAGAAGACTCATATTAGGACACGTAGTGATGGTGATGGAATTAGCATTTATGCTTCTAGCAATGTTTGGATTGACCATGTTTCCATGAGAAATTGCACTGATGGTCTCATTGATGCTATTAGAGGTTCCACTGCAATTACCATCTCCAATTGCCATTTTACAGACCATAATAAGGTCATGCTTTTTGGTGCTAATGATTTTTCTCCCGATGATAAAATAATGCAAATCACGGTGGCCTTTAACCACTTTGGTAAAAGATTAGTGCAAAGAATGCCAAGGTGTAGATTTGGATTTTTCCATTTGGTAAATAATGACTATACTCATTGGGAAATGTATGCTATTGGGGGTAGCATGCATCCTATCATTATTAGTGAGGGTAATCGATTTATGGCTTCTAATGACAGCACTGCTAAAGAGGTAACAAAGAGGAACGGACTAGTTGGACTAAATTTATGGCAATGGAAATCAATCAACGATGAATTTATTAATGGAGCATTTTTTAAGGAATCTGGACCTGATCTAGTGCTAAGTCACCTATTCAAACCTGAAGACATCTTGAAAGCAATACCTGGCAGATTTGTGAGTTCCCTAACAGAATTTGCTGGGGCACTTAGGTGTAGGTATGGTCGACCTTGTTAA 1356 0.3975 MMKAYNLFISLCIVLILPTLNGNTLENTTNSEDDFQVSDIEEKLWQEMEARAEKTNREAYFTNPYEVSKNFTSIIAEDVEGHNNTRRSLKGKKAGLPCTATNPIDRCWRCDPNWEKDRQKLATCVLGFGKNTIGGKGGEFYTVTDPSDDDIVNPKPGTLRYAVTRDRPLWIIFSRNMNIKLTQELLVSSDKTIDGRGVDVHISKGCGITINYAQNVIIHGIKVYDIKPGVGGRIRYGEGEKTHIRTRSDGDGISIYASSNVWIDHVSMRNCTDGLIDAIRGSTAITISNCHFTDHNKVMLFGANDFSPDDKIMQITVAFNHFGKRLVQRMPRCRFGFFHLVNNDYTHWEMYAIGGSMHPIIISEGNRFMASNDSTAKEVTKRNGLVGLNLWQWKSINDEFINGAFFKESGPDLVLSHLFKPEDILKAIPGRFVSSLTEFAGALRCRYGRPC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1603 451 Pfam Pectate lyase, N terminus 44 89 IPR007524 GO:0030570
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Amo05g1603 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Amo05g1603 451 PANTHER PECTATE LYASE 7 451 - -
Amo05g1603 451 PANTHER PECTATE LYASE 18-RELATED 7 451 IPR045032 GO:0030570
Amo05g1603 451 Pfam Pectate lyase 184 368 IPR002022 -
Amo05g1603 451 SUPERFAMILY Pectin lyase-like 123 451 IPR011050 -
Amo05g1603 451 SMART amb_all 176 374 IPR002022 -
Amo05g1603 451 Gene3D - 101 444 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1603 Amo-Chr5 29217453 29221171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1603 7 451 Polysaccharide Lyase AT1G14420 50.972 1.59e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1603 K01728 - gmx:100798579 548.125