Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1580 ATGGGTTTGGGTGCTGAGAATGGTAAGGTGGTAGATTCTTGGGATGTGTGTAAATCAAAGWGGAAGAAGAAGAGTAAGAAATTGAAGCAGAAGGAAGGGGAGGTAGTGGTGGAKGAGGAAGATGAGGAGTTTGAGGGAGAGACTGGGTGTTGGGTTAGGCTAAGGTTCATGGGGAGCTGCATTTCTTCAAGACCCAAAGTTGATAACTCAGTCAGTGGCACCACCACTCATGATGCTGAAAGTAAATCAACTAGTGATACAAGTAGAGACCAACGAAGTGAACCAACGGCCCCAGTAGTCTCATCTACAACCACTAGCAATGCAAGCAGTTCATCAACTTCTAAACTCGAAGAGGAGCTTAAAGTTGCCTCCAGGCTACGAAAGTTCTCTTTCAATGATCTTAAGTTGGCAACGAGAAATTTTCGGCCTGAGAGTCTTCTTGGCGAAGGTGGGTTTGGTTGCGTATTCAAGGGATGGGTTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACCGTTGCCGTAAAAACCCTCAACCATGATGGGCTCCAAGGCCATAAAGAATGGCTGGCTGAAGTAAACTTTCTTGGTGATCTAGTCCATCCACACCTTGTTAAGCTTATAGGGTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGAAGCCTAGAAAATCACTTATTTAGGAGATCCATGCCTCTTCCATGGTCCGTTAGGTTGAAAATTGCACTAGGAGCAGCTAAGGGTCTTGCTTTTCTTCACGAAGAAGCTGAACGACCAGTAATATATAGAGATTTTAAAACTTCAAATATATTATTAGATGCAGAATACAACGCCAAGCTCTCAGACTTTGGACTCGCCAAAGATGGTCCAGAAGGAGATAAAACCCATGTGTCTACCCGAGTGATGGGAACCTATGGTTATGCAGCACCGGAGTATGTCATGACAGGTCATCTTACATCAAGAAGTGACGTGTATAGTTTTGGAGTGGTACTACTTGAGATGTTGACCGGAAGAAGATCTATGGACAAACACCGTCCCAATGGCGAACATAACCTTGTGGAATGGGCTCGGCCGCATCTGGGAGAGAAGAGAAGGTTCTATAGGCTGTTGGACCCTCGCCTTGAAGGCCATTTCTCCATAAAAGGAGCTCAAAAAGCTGCCCAAATTGCCGCTCGCTGTCTTAGTAGAGATCCAAAAGCCAGACCCYTAATGAGTGAAGTTGTAGAAGATCTAAAGCCTCTGCTAAGTCTTAGGGACATGGCAAGCTCTTCATATTACTTCCAATCGATGCAAGCTGACCGCTTTAGCCCTAGTCCAAATACCCGAAATGGGCGGACACAAGGAGTGTTCCTCGCCCGGAATGCGCAGAGGAGTCTTTCAATACCCCATGGTATCCATGCCTCTCCATATCACCATCAGTTTCTGCAACAATCACCAAAACCTAATGGCAAAGCATAG 1488 0.4577 MGLGAENGKVVDSWDVCKSKXKKKSKKLKQKEGEVVVXEEDEEFEGETGCWVRLRFMGSCISSRPKVDNSVSGTTTHDAESKSTSDTSRDQRSEPTAPVVSSTTTSNASSSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPHLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSVRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGEKRRFYRLLDPRLEGHFSIKGAQKAAQIAARCLSRDPKARPLMSEVVEDLKPLLSLRDMASSSYYFQSMQADRFSPSPNTRNGRTQGVFLARNAQRSLSIPHGIHASPYHHQFLQQSPKPNGKA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1580 495 Pfam Protein tyrosine and serine/threonine kinase 145 421 IPR001245 GO:0004672|GO:0006468
Amo05g1580 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Amo05g1580 495 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 75 485 - -
Amo05g1580 495 ProSitePatterns Protein kinases ATP-binding region signature. 147 179 IPR017441 GO:0005524
Amo05g1580 495 Gene3D Transferase(Phosphotransferase) domain 1 227 441 - -
Amo05g1580 495 CDD STKc_IRAK 147 424 - -
Amo05g1580 495 SUPERFAMILY Protein kinase-like (PK-like) 127 446 IPR011009 -
Amo05g1580 495 Coils Coil 39 41 - -
Amo05g1580 495 MobiDBLite consensus disorder prediction 67 113 - -
Amo05g1580 495 Coils Coil 22 37 - -
Amo05g1580 495 Gene3D Phosphorylase Kinase; domain 1 100 226 - -
Amo05g1580 495 MobiDBLite consensus disorder prediction 90 113 - -
Amo05g1580 495 MobiDBLite consensus disorder prediction 67 81 - -
Amo05g1580 495 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1580 495 PANTHER OS01G0588500 PROTEIN-RELATED 75 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1580 Amo-Chr5 28241241 28245622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1580 127 421 Glycoside Hydrolase AT3G07070 59.060 2.50e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo05g1580 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1580 - - gmx:100787151 799.275