Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1579 ATGGCAACACAAGCTGAATTTGAGCATCCTAGAAAGGCCTTTGGATGGGCAGCTAGGGATACTTCTGGTGTTCTCTCACCTTTTAATTTCTCTAGAAGAAACTGTAATGATGCTCTAGAGAACTATTGTCCACAAATGATTCTCACATATGGTGTCAAAGACACTGATGGCACCATCACCTATGGGGGCTATTCTGACTTAATGGTTGCTGATGAAAACTTTGTGGTTCGAATTCCTCAAGGCTTTCCTCTTGATGCTGCTGCTCCTCTCCTTTGTGCCGGGATCACAGTGTATAGCCCTCTTAGATATTATGGGCTTGACAAGCCTGGACTCCATGTGGGTGTGGTTGGTCTTGGTGGGTTAGGTCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGGGTTAAGGCTGCAACGGGCAGTTTTGATGGTATTATTGACACAGTTTCTGCCTTCCATCCTTTATTGCCTCTAATTAGTTTATTGAAGTGTCACGGGAAGCTTGTAATGGTTGGTGCCCCGGAGAAGCCTCTAGAGCTGCCAGTATTTCCTTTAATTATGGGAAGAAAGACAGTTGCCGGTAGTACCATCGGAGGGATGAAAGAGACACAAGAGATGATTGATTTTGCTGCTAAACATAACGTGAAACCTGAAATTGAGGTTATTCCTATTGATTATATTAACACAGCATTGGAGCGTCTACTCAAAGCTGATGTCAAATATCGTTTTGTCATCGACATTGGAAACACTCTAAAACCTTCCACTTGA 765 0.4327 MATQAEFEHPRKAFGWAARDTSGVLSPFNFSRRNCNDALENYCPQMILTYGVKDTDGTITYGGYSDLMVADENFVVRIPQGFPLDAAAPLLCAGITVYSPLRYYGLDKPGLHVGVVGLGGLGHMAVKFAKAFGVKAATGSFDGIIDTVSAFHPLLPLISLLKCHGKLVMVGAPEKPLELPVFPLIMGRKTVAGSTIGGMKETQEMIDFAAKHNVKPEIEVIPIDYINTALERLLKADVKYRFVIDIGNTLKPST* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1579 254 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 215 IPR036291 -
Amo05g1579 254 Pfam Zinc-binding dehydrogenase 135 210 IPR013149 -
Amo05g1579 254 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 134 253 - -
Amo05g1579 254 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 33 135 - -
Amo05g1579 254 SUPERFAMILY GroES-like 31 110 IPR011032 -
Amo05g1579 254 PANTHER ALDEHYDE REDUCTASE 134 253 - -
Amo05g1579 254 Gene3D - 196 243 - -
Amo05g1579 254 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 35 - -
Amo05g1579 254 Gene3D - 23 97 - -
Amo05g1579 254 PANTHER ALDEHYDE REDUCTASE 33 135 - -
Amo05g1579 254 Gene3D - 137 195 - -
Amo05g1579 254 Gene3D - 98 136 - -
Amo05g1579 254 PANTHER ALDEHYDE REDUCTASE 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1579 Amo-Chr5 28064920 28066725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1579 31 253 Monolignol Biosynthesis Gene Families AT4G37990 61.719 2.98e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1579 - K23232 gmx:100809071 340.887