Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1564 ATGGCGCGGAAGCAGAGATCGAGATCTGGCTACCTCGAGGTTCAAATAAGGGAAGGAAATGGACCACCCAGGGCAACGAAATTCACAAGTACGCTTTGTCGGTGTCGATTAGGTTTTTACCGTCCGATAATTTCAGGGGAGGCATGCGCAGAAATTGATTTCAATTGGGGGGATGCTGATGATGGAATGAGCGGCGAAACCGTGCCGGCAGAGGAAGCAGAAGCGATGGATTCGTCTGCCGCAGATGCGGACATAGATGCAGAAGCAGCAGTGAGGATTGTTGATGGGATAGGGTCCTTTCGTGCAATTGAATTTTCTTCCCTGACAGCCAAAGACGTGCTGACGACGGAGTTCACAAGCCTACAGGCAGCTTATGACTACTACAACGAATTCGGTTGCATGAAAGGATTCTCGGTCAAGAGGTCCAATGTGGGTCGCAGAACAAAGCAGGGGGCAGAGGGCAAAATAATTTGGCAGATATTTGTGTGCTCGAGGGAAGGAGAGCGCGACGGGAAACATATGCATCGGGAAGACAGGAAGAAGGATCCTCGACCGATCACACGGTGCAGGTGTGAAGCCCGGATTAAGGTCCACGTTGATGATGCCAGCGGAGCAGTCAAAGAAGGGGATTTGCACCAAATCAATTCCATAAGGAAATCTGGGTTGCAGGTGCCGACGATTTTCCGTGCGTTTGCCAATCAGTCAGGAGGATTTGAGACTGTTGGGTTCGAGACAATATGGACAAATAGCGTGGTGGACCACGGGTTGGAGGATCATCCGTGGATAGTAGATATGTATTCCAAGAAGCATTCCTGGTCCAATGCCCATATCTGGGAGAAATTCTTCGCAGGACTGAAGACGACATCCAGGAGGAGAGAACTAGTGGCAGACTACAAGTCTGCATATGGCGAGCCTGTTGTGAAGACGAAACTCGAGGCCATTGAGAAGTTCGCTGCAACGGTTTATACAAGAGAGGTTTTCGAACTATTTCGGGAGGTGCTGATGCTAGCCAACAACGTTAGAGTTGTGTCCACCAAGAGGACGAGCGCTTGTGTTTTGTTCGAAGTTGCAATGTACTGCAAGCAGATATCATGGGCCGTGTCGTGGGCCGAGGAAGACGACGAATTCAGCTGTTTTTGTCAGGCTAAGCAGTCACGTGCACCCTGCGATGGAACTCGTGTTGGGGAGATCTCAGACGCGGCATACATGAGCATGCACGCAACGATGCTGGATGATTACAGGGAGCTGGTGAGCCTGTCTTGCCAATTTTTTGAGGACTACATGGACGTGAAAACATGGTTAGCAAAGGAGCGTCAATCCCTGCGGGACAAACATCGCCAAAGGTTGGGTGTTGTTGAGGAGGCCAGCAGGGTGTCTATTCGGGACCCGATGCGGGCAAGGTACAAAGGATGCGGTCGAAGAGTTGTCACCTCCCGGGGAAAGTTTCGTCGTGTTTAG 1458 0.5096 MARKQRSRSGYLEVQIREGNGPPRATKFTSTLCRCRLGFYRPIISGEACAEIDFNWGDADDGMSGETVPAEEAEAMDSSAADADIDAEAAVRIVDGIGSFRAIEFSSLTAKDVLTTEFTSLQAAYDYYNEFGCMKGFSVKRSNVGRRTKQGAEGKIIWQIFVCSREGERDGKHMHREDRKKDPRPITRCRCEARIKVHVDDASGAVKEGDLHQINSIRKSGLQVPTIFRAFANQSGGFETVGFETIWTNSVVDHGLEDHPWIVDMYSKKHSWSNAHIWEKFFAGLKTTSRRRELVADYKSAYGEPVVKTKLEAIEKFAATVYTREVFELFREVLMLANNVRVVSTKRTSACVLFEVAMYCKQISWAVSWAEEDDEFSCFCQAKQSRAPCDGTRVGEISDAAYMSMHATMLDDYRELVSLSCQFFEDYMDVKTWLAKERQSLRDKHRQRLGVVEEASRVSIRDPMRARYKGCGRRVVTSRGKFRRV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1564 485 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 72 205 - -
Amo05g1564 485 Pfam FAR1 DNA-binding domain 126 201 IPR004330 -
Amo05g1564 485 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 72 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1564 Amo-Chr5 27275743 27278517 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g1564 FAR1 1.5e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1564 - - aip:107615425 342.043