Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1547 ATGGGTAACTGTTTAGATTCTTCTGCAAAAGTTGATGCAGCTCAGAGTTCTAGAGGCAATTCTGTTTCAGCAATCTCAAAAACTCCACCCTCTACCTTATCAATTCCATCACACAGCGTGAAAAAAGCAATGCTTCAACTCTTCCCACGCCAAGGTCCGAGGGTGAAATCTTGTCTTCGCCAAATCTTAAGGCCTTCACATTCAATGATCTCAAGAATGCCACCCGAAATTTTCGTCCGGTCAGGAATGGTTGTTGCTGTAAAGAAGCTTAAGCCTGAAAGTTTTCAGGGTCATAGGGAGTGGCTGACTGAGGTTAACTACCTTGGACAACTGCACCATCCTAATCTTGTTAAATTGATTGGGTACTGCTTGGAAGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCGAAAGGGAGCTTAGAGAATCATCTATTTAGAAGAGGACCACAACCACTGTCTTGGGCAGTGAGGATGAAGGTGGCCATTGGTGCTGCCAGAGGACTCACTTTTCTTCACAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCTAACATCCTGCTGGATGCGGAGTTCAATGCTAAACTTTCTGATTTCGGCCTGGCCAAGGCAGGTCCAACCGGTGATAGAACTCATGTATCTACACAAGTCATGGGAACTCAAGGATACGCGGCACCTGAATATGTAGCAACTGGTCGGCTAACGGCGAAAAGTGATGTATATAGCTTTGGGGTTGTGATGTTGGAACTCTTGTCCGGGAGACGCGCTGTTGATAAAACAATATCTGGTATGGAGCAGAATCTGGTAGACTGGGCAAAACCATATTTGGGCGATAAAAGAAGGTTGTTTCGGATTATGGATACCAAATTGGAGGGACAATACCCGCAGAAGGCAGCCTTCATGGCTGCTACGCTTGCCCTTCAGTGCCTTAACAGTGAAGCCAAGGCAAGGCCTGCCATGACAGAGGTTTTAGCAACCCTTGAACAGATAGACTCCCCCAAAACTGCAGGCCGCCACTCCCACTCGGAACATCTGAGAGTCCACACTCCCGTGAGGAGGTCTCCGGCACGAAATCGGTCCCCTTTACATCTGACTCCTGCTGCATCTCCACTGCCATCTCACCGGCAATCTCTTCGAGTGCACTAA 1155 0.4745 MGNCLDSSAKVDAAQSSRGNSVSAISKTPPSTLSIPSHSVKKAMLQLFPRQGPRVKSCLRQILRPSHSMISRMPPEIFVRSGMVVAVKKLKPESFQGHREWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWAVRMKVAIGAARGLTFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAVDKTISGMEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKAAFMAATLALQCLNSEAKARPAMTEVLATLEQIDSPKTAGRHSHSEHLRVHTPVRRSPARNRSPLHLTPAASPLPSHRQSLRVH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1547 384 MobiDBLite consensus disorder prediction 337 353 - -
Amo05g1547 384 SUPERFAMILY Protein kinase-like (PK-like) 80 330 IPR011009 -
Amo05g1547 384 CDD STKc_IRAK 79 333 - -
Amo05g1547 384 MobiDBLite consensus disorder prediction 9 34 - -
Amo05g1547 384 PANTHER OS01G0588500 PROTEIN-RELATED 81 380 - -
Amo05g1547 384 Gene3D Transferase(Phosphotransferase) domain 1 137 354 - -
Amo05g1547 384 Pfam Protein tyrosine and serine/threonine kinase 82 329 IPR001245 GO:0004672|GO:0006468
Amo05g1547 384 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 81 380 - -
Amo05g1547 384 Gene3D Phosphorylase Kinase; domain 1 76 136 - -
Amo05g1547 384 ProSiteProfiles Protein kinase domain profile. 45 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1547 384 MobiDBLite consensus disorder prediction 334 384 - -
Amo05g1547 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Amo05g1547 384 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1547 Amo-Chr5 26852973 26855681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1547 80 330 Glycoside Hydrolase AT3G07070 55.906 6.66e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo05g1547 PK_Tyr_Ser-Thr 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1547 - - gmx:100809778 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1547 05 26852973 26855681 Amo15g0362 15 15048381 15051180 hybridization