Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1541 ATGGAGGAGAACAGCCTTACTGAGACATGCTGGTTCAACATCTTGGCCAATGATCTCCTTCGCTGGCAATTGGATGGGGCCTTTTCGGGCGACTACTATGATTCCACCTCTCCGGACGGCGGAGCTTCATCGGCGGTATCCATGGACATTGTCTCTGACCAAAATAGCATGAAGCAGATCAATGAAAGGCTCTTTGCACTTAGGACAGCCGTTCCCAACGTAACCAAGATGGATAAGGCATCAATCATAAAGGATGGAACTCGTTAG 267 0.4906 MEENSLTETCWFNILANDLLRWQLDGAFSGDYYDSTSPDGGASSAVSMDIVSDQNSMKQINERLFALRTAVPNVTKMDKASIIKDGTR* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1541 88 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 88 IPR011598 GO:0046983
Amo05g1541 88 PANTHER TRANSCRIPTION FACTOR BHLH35 13 85 - -
Amo05g1541 88 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 85 IPR036638 GO:0046983
Amo05g1541 88 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1541 Amo-Chr5 26379510 26380697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1541 22 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.077 2.71e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1541 - - adu:107474432 156.762